Project ID: plumID:23.041
Name: Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference
Category: methods
Keywords: EMMIVox, cryo-EM, single-structure refinement, ensemble refinement, Bayesian inference, B-factors, structural ensembles
PLUMED version: 2.10
Contributor: Samuel Hoff
Submitted on: 16 Oct 2023
Publication: S. E. Hoff, F. E. Thomasen, K. Lindorff-Larsen, M. Bonomi, Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference (2023)

PLUMED input files

File Compatible with
03-7n00/2-Production/cc-0.8/plumed_EMMI.dat tested on master
03-7n00/2-Production/cc-1.0/plumed_EMMI.dat tested on master
03-7n00/2-Production/cc-0.7/plumed_EMMI.dat tested on master
03-7n00/2-Production/cc-0.9/plumed_EMMI.dat tested on master
05-7b5o/2-Production/cc-0.7/plumed_EMMI.dat tested on master
05-7b5o/2-Production/cc-1.0/plumed_EMMI.dat tested on master
05-7b5o/2-Production/cc-0.9/plumed_EMMI.dat tested on master
05-7b5o/2-Production/cc-0.8/plumed_EMMI.dat tested on master
06-7mjs/2-Production/cc-1.0/plumed_EMMI.dat tested on master
06-7mjs/2-Production/cc-0.7/plumed_EMMI.dat tested on master
06-7mjs/2-Production/cc-0.9/plumed_EMMI.dat tested on master
06-7mjs/2-Production/cc-0.8/plumed_EMMI.dat tested on master
07-7lq6/2-Production/cc-0.7/plumed_EMMI.dat tested on master
07-7lq6/2-Production/cc-1.0/plumed_EMMI.dat tested on master
07-7lq6/2-Production/cc-0.9/plumed_EMMI.dat tested on master
07-7lq6/2-Production/cc-0.8/plumed_EMMI.dat tested on master
01-7p6a/2-Production/cc-0.8/plumed_EMMI.dat tested on master
01-7p6a/2-Production/cc-0.7/plumed_EMMI.dat tested on master
01-7p6a/2-Production/cc-1.0/plumed_EMMI.dat tested on master
01-7p6a/2-Production/cc-0.9/plumed_EMMI.dat tested on master

Last tested: 28 Feb 2024, 06:50:01

Project description and instructions
GROMACS topology and PLUMED input files to perform model refinement using cryo-EM density maps and EMMIVox. Additional information and analysis scripts can be found here.

Submission history
[v1] 16 Oct 2023: original submission

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