PLUMED-NEST

Project ID: plumID:23.000
Name: Atomistic simulations of RNA tetraloop folding via PTWTE-WTM
Archive: https://github.com/gzerze/rna_ptwte_wtm_example_input/raw/main/plumed.zip
Category: bio
Keywords: parallel tempering, well-tempered metadynamics, well-tempered ensemble, RNA, Tetraloop, Folding
PLUMED version: 2.3.1
Contributor: Gül Zerze
Submitted on: 04 Jan 2023
Publication: G. H. Zerze, P. M. Piaggi, P. G. Debenedetti, A Computational Study of RNA Tetraloop Thermodynamics, Including Misfolded States. The Journal of Physical Chemistry B. 125, 13685–13695 (2021)

PLUMED input files

File	Compatible with
plumed_PT.0.dat
plumed_PT.1.dat
plumed_PT.10.dat
plumed_PT.11.dat
plumed_PT.12.dat
plumed_PT.13.dat
plumed_PT.2.dat
plumed_PT.3.dat
plumed_PT.4.dat
plumed_PT.5.dat
plumed_PT.6.dat
plumed_PT.7.dat
plumed_PT.8.dat
plumed_PT.9.dat

Last tested: 14 Dec 2024, 09:28:22

Project description and instructions
Originally used with GROMACS version 2016.3.

Submission history
[v1] 04 Jan 2023: original submission

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