Project ID: plumID:23.034
Stderr for source: full_model/plumed.dat
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#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">> PairOrientationalEntropy.s3OqME.cpp: In constructor ‘PLMD::colvar::PairOrientationalEntropy::PairOrientationalEntropy(const PLMD::ActionOptions&)’: PairOrientationalEntropy.s3OqME.cpp:193:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare] 193 | for(unsigned int i=0;i<nhist_[0];i++) { PairOrientationalEntropy.s3OqME.cpp:194:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 194 | for(unsigned int j=0;j<nhist_[1];j++) { PairOrientationalEntropy.s3OqME.cpp:252:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 252 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.s3OqME.cpp:256:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 256 | for(unsigned i=0;i<nhist_[1];++i){ PairOrientationalEntropy.s3OqME.cpp: In member function ‘virtual void PLMD::colvar::PairOrientationalEntropy::calculate()’: PairOrientationalEntropy.s3OqME.cpp:511:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 511 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.s3OqME.cpp:512:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 512 | for(unsigned j=0;j<nhist_[1];++j){ PairOrientationalEntropy.s3OqME.cpp:523:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 523 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.s3OqME.cpp:524:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 524 | for(unsigned j=0;j<nhist_[1];++j){ PairOrientationalEntropy.s3OqME.cpp:562:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 562 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.s3OqME.cpp:563:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 563 | for(unsigned j=0;j<nhist_[1];++j){ PairOrientationalEntropy.s3OqME.cpp:581:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 581 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.s3OqME.cpp:582:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 582 | for(unsigned j=0;j<nhist_[1];++j){ PairOrientationalEntropy.s3OqME.cpp:593:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 593 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.s3OqME.cpp:594:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 594 | for(unsigned j=0;j<nhist_[1];++j){ PairOrientationalEntropy.s3OqME.cpp: In member function ‘double PLMD::colvar::PairOrientationalEntropy::integrate(PLMD::Matrix , std::vector ) const’: PairOrientationalEntropy.s3OqME.cpp:626:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 626 | for(unsigned i=1;i<(nhist_[0]-1);++i){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.s3OqME.cpp:627:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 627 | for(unsigned j=1;j<(nhist_[1]-1);++j){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.s3OqME.cpp:632:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 632 | for(unsigned i=1;i<(nhist_[0]-1);++i){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.s3OqME.cpp:636:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 636 | for(unsigned j=1;j<(nhist_[1]-1);++j){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.s3OqME.cpp: In member function ‘PLMD::Vector PLMD::colvar::PairOrientationalEntropy::integrate(PLMD::Matrix<PLMD::VectorGeneric<3> >, std::vector ) const’: PairOrientationalEntropy.s3OqME.cpp:653:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 653 | for(unsigned i=1;i<(nhist_[0]-1);++i){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.s3OqME.cpp:654:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 654 | for(unsigned j=1;j<(nhist_[1]-1);++j){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.s3OqME.cpp:659:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 659 | for(unsigned i=1;i<(nhist_[0]-1);++i){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.s3OqME.cpp:663:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 663 | for(unsigned j=1;j<(nhist_[1]-1);++j){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.s3OqME.cpp: In member function ‘PLMD::Tensor PLMD::colvar::PairOrientationalEntropy::integrate(PLMD::Matrix<PLMD::TensorGeneric<3, 3> >, std::vector ) const’: PairOrientationalEntropy.s3OqME.cpp:680:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 680 | for(unsigned i=1;i<(nhist_[0]-1);++i){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.s3OqME.cpp:681:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 681 | for(unsigned j=1;j<(nhist_[1]-1);++j){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.s3OqME.cpp:686:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 686 | for(unsigned i=1;i<(nhist_[0]-1);++i){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.s3OqME.cpp:690:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 690 | for(unsigned j=1;j<(nhist_[1]-1);++j){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.s3OqME.cpp: In member function ‘void PLMD::colvar::PairOrientationalEntropy::outputGofr(PLMD::Matrix , const char*)’: PairOrientationalEntropy.s3OqME.cpp:705:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 705 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.s3OqME.cpp:706:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 706 | for(unsigned j=0;j<nhist_[1];++j){ WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">> ManyAnglePlus.fvbKl7.cpp: In constructor ‘PLMD::colvar::ManyAngle::ManyAngle(const PLMD::ActionOptions&)’: ManyAnglePlus.fvbKl7.cpp:67:27: warning: ‘PLMD::colvar::ManyAngle::moment2’ will be initialized after [-Wreorder] 67 | bool pbc, serial, mean, moment2; | ^~~~~~~ ManyAnglePlus.fvbKl7.cpp:67:13: warning: ‘bool PLMD::colvar::ManyAngle::serial’ [-Wreorder] 67 | bool pbc, serial, mean, moment2; | ^~~~~~ ManyAnglePlus.fvbKl7.cpp:99:1: warning: when initialized here [-Wreorder] 99 | ManyAngle::ManyAngle(const ActionOptions&ao): | ^~~~~~~~~ ManyAnglePlus.fvbKl7.cpp:123:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 123 | if(mean) addComponentWithDerivatives("mean"); componentIsNotPeriodic("mean"); moments[0]=getPntrToComponent("mean"); // (Z) | ^~ ManyAnglePlus.fvbKl7.cpp:123:49: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 123 | if(mean) addComponentWithDerivatives("mean"); componentIsNotPeriodic("mean"); moments[0]=getPntrToComponent("mean"); // (Z) | ^~~~~~~~~~~~~~~~~~~~~~ ManyAnglePlus.fvbKl7.cpp:124:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 124 | if(moment2) addComponentWithDerivatives("moment2"); componentIsNotPeriodic("moment2"); moments[1]=getPntrToComponent("moment2"); // (Z) | ^~ ManyAnglePlus.fvbKl7.cpp:124:55: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 124 | if(moment2) addComponentWithDerivatives("moment2"); componentIsNotPeriodic("moment2"); moments[1]=getPntrToComponent("moment2"); // (Z) | ^~~~~~~~~~~~~~~~~~~~~~ </pre>