Project ID: plumID:22.039
Stderr for source: urea_plumed.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">> PairEntropy.M59N24.cpp: In member function ‘virtual void PLMD::colvar::PairEntropy::calculate()’: PairEntropy.M59N24.cpp:264:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 264 | if (minBin > (nhist-1)) minBin=nhist-1; | ~~~~~~~^~~~~~~~~~~ PairEntropy.M59N24.cpp:266:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 266 | if (maxBin > (nhist-1)) maxBin=nhist-1; | ~~~~~~~^~~~~~~~~~~ WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">> ManyAngle.Ws9zZJ.cpp: In constructor ‘PLMD::colvar::ManyAngle::ManyAngle(const PLMD::ActionOptions&)’: ManyAngle.Ws9zZJ.cpp:68:27: warning: ‘PLMD::colvar::ManyAngle::moment2’ will be initialized after [-Wreorder] 68 | bool pbc, serial, mean, moment2; | ^~~~~~~ ManyAngle.Ws9zZJ.cpp:68:13: warning: ‘bool PLMD::colvar::ManyAngle::serial’ [-Wreorder] 68 | bool pbc, serial, mean, moment2; | ^~~~~~ ManyAngle.Ws9zZJ.cpp:100:1: warning: when initialized here [-Wreorder] 100 | ManyAngle::ManyAngle(const ActionOptions&ao): | ^~~~~~~~~ ManyAngle.Ws9zZJ.cpp:124:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 124 | if(mean) addComponentWithDerivatives("mean"); componentIsNotPeriodic("mean"); moments[0]=getPntrToComponent("mean"); // (Z) | ^~ ManyAngle.Ws9zZJ.cpp:124:49: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 124 | if(mean) addComponentWithDerivatives("mean"); componentIsNotPeriodic("mean"); moments[0]=getPntrToComponent("mean"); // (Z) | ^~~~~~~~~~~~~~~~~~~~~~ ManyAngle.Ws9zZJ.cpp:125:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 125 | if(moment2) addComponentWithDerivatives("moment2"); componentIsNotPeriodic("moment2"); moments[1]=getPntrToComponent("moment2"); // (Z) | ^~ ManyAngle.Ws9zZJ.cpp:125:55: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 125 | if(moment2) addComponentWithDerivatives("moment2"); componentIsNotPeriodic("moment2"); moments[1]=getPntrToComponent("moment2"); // (Z) | ^~~~~~~~~~~~~~~~~~~~~~ terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (core/PlumedMain.cpp:986) void PLMD::PlumedMain::readInputWords(const std::vector<std::__cxx11::basic_string>&, const bool&) ERROR I cannot understand line: PAIRENTROPY LABEL=s ATOMS=C MAXR=0.6 SIGMA=0.05 Maybe a missing space or a typo? [fv-az1153-362:68668] *** Process received signal *** [fv-az1153-362:68668] Signal: Aborted (6) [fv-az1153-362:68668] Signal code: (-6) [fv-az1153-362:68668] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f03e0842520] [fv-az1153-362:68668] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f03e08969fc] [fv-az1153-362:68668] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f03e0842476] [fv-az1153-362:68668] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f03e08287f3] [fv-az1153-362:68668] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa4f26)[0x7f03e0ca4f26] [fv-az1153-362:68668] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xb6d9c)[0x7f03e0cb6d9c] [fv-az1153-362:68668] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xb6e07)[0x7f03e0cb6e07] [fv-az1153-362:68668] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f03e0cb70bb] [fv-az1153-362:68668] [ 8] plumed_master(+0x12e7f)[0x560905fbce7f] [fv-az1153-362:68668] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f03e0829d90] [fv-az1153-362:68668] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f03e0829e40] [fv-az1153-362:68668] [11] plumed_master(+0x13115)[0x560905fbd115] [fv-az1153-362:68668] *** End of error message *** </pre>