Project ID: plumID:22.035
Source: swap.dat
Originally used with PLUMED version: 2.6.1
Stable: zipped raw stdout - zipped raw stderr - stderr
Master: zipped raw stdout - zipped raw stderr - stderr

Click on the labels of the actions for more information on what each action computes
tested onv2.10
tested onmaster
# RESTART
# Define CVs. Phi, psi and Rg
MOLINFOThis command is used to provide information on the molecules that are present in your system. More details STRUCTUREa file in pdb format containing a reference structure=swap.pdb
WHOLEMOLECULESThis action is used to rebuild molecules that can become split by the periodic boundary conditions. More details ENTITY0the atoms that make up a molecule that you wish to align=1-1082

# Rg on CA atoms
rg: GYRATIONCalculate the radius of gyration, or other properties related to it. More details ATOMSthe group of atoms that you are calculating the Gyration Tensor for=5,22,33,57,67,77,104,110,121,140,152,166,185,197,212,227,242,254,274,286,301,321,331,345,357,371,403,409,426,448,463,477,489,508,523,537,544,559,574,588,607,631,643,657,671,695,710,725,737,752,771,778,793,808,823,843,854,870,887,906,923,933,945,964,986,1008,1030,1037,1053,1063,1073 NOPBC ignore the periodic boundary conditions when calculating distances

# Dihedral angles psi1: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-1the four atoms that are required to calculate the psi dihedral for residue 1. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi2: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-2the four atoms that are required to calculate the psi dihedral for residue 2. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi2: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-2the four atoms that are required to calculate the phi dihedral for residue 2. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi3: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-3the four atoms that are required to calculate the psi dihedral for residue 3. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi3: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-3the four atoms that are required to calculate the phi dihedral for residue 3. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi4: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-4the four atoms that are required to calculate the psi dihedral for residue 4. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi4: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-4the four atoms that are required to calculate the phi dihedral for residue 4. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi5: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-5the four atoms that are required to calculate the psi dihedral for residue 5. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi5: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-5the four atoms that are required to calculate the phi dihedral for residue 5. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi6: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-6the four atoms that are required to calculate the psi dihedral for residue 6. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi6: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-6the four atoms that are required to calculate the phi dihedral for residue 6. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi7: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-7the four atoms that are required to calculate the psi dihedral for residue 7. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi7: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-7the four atoms that are required to calculate the phi dihedral for residue 7. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi8: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-8the four atoms that are required to calculate the psi dihedral for residue 8. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi8: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-8the four atoms that are required to calculate the phi dihedral for residue 8. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi9: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-9the four atoms that are required to calculate the psi dihedral for residue 9. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi9: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-9the four atoms that are required to calculate the phi dihedral for residue 9. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi10: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-10the four atoms that are required to calculate the psi dihedral for residue 10. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi10: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-10the four atoms that are required to calculate the phi dihedral for residue 10. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi11: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-11the four atoms that are required to calculate the psi dihedral for residue 11. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi11: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-11the four atoms that are required to calculate the phi dihedral for residue 11. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi12: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-12the four atoms that are required to calculate the psi dihedral for residue 12. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi12: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-12the four atoms that are required to calculate the phi dihedral for residue 12. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi13: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-13the four atoms that are required to calculate the psi dihedral for residue 13. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi13: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-13the four atoms that are required to calculate the phi dihedral for residue 13. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi14: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-14the four atoms that are required to calculate the psi dihedral for residue 14. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi14: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-14the four atoms that are required to calculate the phi dihedral for residue 14. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi15: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-15the four atoms that are required to calculate the psi dihedral for residue 15. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi15: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-15the four atoms that are required to calculate the phi dihedral for residue 15. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi16: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-16the four atoms that are required to calculate the psi dihedral for residue 16. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi16: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-16the four atoms that are required to calculate the phi dihedral for residue 16. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi17: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-17the four atoms that are required to calculate the psi dihedral for residue 17. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi17: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-17the four atoms that are required to calculate the phi dihedral for residue 17. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi18: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-18the four atoms that are required to calculate the psi dihedral for residue 18. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi18: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-18the four atoms that are required to calculate the phi dihedral for residue 18. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi19: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-19the four atoms that are required to calculate the psi dihedral for residue 19. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi19: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-19the four atoms that are required to calculate the phi dihedral for residue 19. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi20: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-20the four atoms that are required to calculate the psi dihedral for residue 20. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi20: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-20the four atoms that are required to calculate the phi dihedral for residue 20. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi21: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-21the four atoms that are required to calculate the psi dihedral for residue 21. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi21: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-21the four atoms that are required to calculate the phi dihedral for residue 21. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi22: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-22the four atoms that are required to calculate the psi dihedral for residue 22. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi22: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-22the four atoms that are required to calculate the phi dihedral for residue 22. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi23: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-23the four atoms that are required to calculate the psi dihedral for residue 23. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi23: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-23the four atoms that are required to calculate the phi dihedral for residue 23. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi24: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-24the four atoms that are required to calculate the psi dihedral for residue 24. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi24: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-24the four atoms that are required to calculate the phi dihedral for residue 24. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi25: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-25the four atoms that are required to calculate the psi dihedral for residue 25. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi25: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-25the four atoms that are required to calculate the phi dihedral for residue 25. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi26: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-26the four atoms that are required to calculate the psi dihedral for residue 26. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi26: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-26the four atoms that are required to calculate the phi dihedral for residue 26. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi27: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-27the four atoms that are required to calculate the psi dihedral for residue 27. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi27: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-27the four atoms that are required to calculate the phi dihedral for residue 27. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi28: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-28the four atoms that are required to calculate the psi dihedral for residue 28. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi28: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-28the four atoms that are required to calculate the phi dihedral for residue 28. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi29: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-29the four atoms that are required to calculate the psi dihedral for residue 29. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi29: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-29the four atoms that are required to calculate the phi dihedral for residue 29. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi30: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-30the four atoms that are required to calculate the psi dihedral for residue 30. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi30: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-30the four atoms that are required to calculate the phi dihedral for residue 30. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi31: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-31the four atoms that are required to calculate the psi dihedral for residue 31. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi31: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-31the four atoms that are required to calculate the phi dihedral for residue 31. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi32: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-32the four atoms that are required to calculate the psi dihedral for residue 32. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi32: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-32the four atoms that are required to calculate the phi dihedral for residue 32. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi33: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-33the four atoms that are required to calculate the psi dihedral for residue 33. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi33: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-33the four atoms that are required to calculate the phi dihedral for residue 33. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi34: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-34the four atoms that are required to calculate the psi dihedral for residue 34. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi34: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-34the four atoms that are required to calculate the phi dihedral for residue 34. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi35: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-35the four atoms that are required to calculate the psi dihedral for residue 35. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi35: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-35the four atoms that are required to calculate the phi dihedral for residue 35. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi36: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-36the four atoms that are required to calculate the psi dihedral for residue 36. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi36: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-36the four atoms that are required to calculate the phi dihedral for residue 36. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi37: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-37the four atoms that are required to calculate the psi dihedral for residue 37. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi37: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-37the four atoms that are required to calculate the phi dihedral for residue 37. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi38: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-38the four atoms that are required to calculate the psi dihedral for residue 38. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi38: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-38the four atoms that are required to calculate the phi dihedral for residue 38. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi39: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-39the four atoms that are required to calculate the psi dihedral for residue 39. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi39: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-39the four atoms that are required to calculate the phi dihedral for residue 39. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi40: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-40the four atoms that are required to calculate the psi dihedral for residue 40. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi40: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-40the four atoms that are required to calculate the phi dihedral for residue 40. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi41: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-41the four atoms that are required to calculate the psi dihedral for residue 41. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi41: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-41the four atoms that are required to calculate the phi dihedral for residue 41. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi42: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-42the four atoms that are required to calculate the psi dihedral for residue 42. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi42: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-42the four atoms that are required to calculate the phi dihedral for residue 42. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi43: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-43the four atoms that are required to calculate the psi dihedral for residue 43. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi43: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-43the four atoms that are required to calculate the phi dihedral for residue 43. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi44: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-44the four atoms that are required to calculate the psi dihedral for residue 44. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi44: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-44the four atoms that are required to calculate the phi dihedral for residue 44. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi45: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-45the four atoms that are required to calculate the psi dihedral for residue 45. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi45: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-45the four atoms that are required to calculate the phi dihedral for residue 45. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi46: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-46the four atoms that are required to calculate the psi dihedral for residue 46. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi46: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-46the four atoms that are required to calculate the phi dihedral for residue 46. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi47: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-47the four atoms that are required to calculate the psi dihedral for residue 47. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi47: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-47the four atoms that are required to calculate the phi dihedral for residue 47. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi48: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-48the four atoms that are required to calculate the psi dihedral for residue 48. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi48: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-48the four atoms that are required to calculate the phi dihedral for residue 48. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi49: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-49the four atoms that are required to calculate the psi dihedral for residue 49. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi49: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-49the four atoms that are required to calculate the phi dihedral for residue 49. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi50: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-50the four atoms that are required to calculate the psi dihedral for residue 50. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi50: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-50the four atoms that are required to calculate the phi dihedral for residue 50. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi51: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-51the four atoms that are required to calculate the psi dihedral for residue 51. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi51: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-51the four atoms that are required to calculate the phi dihedral for residue 51. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi52: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-52the four atoms that are required to calculate the psi dihedral for residue 52. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi52: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-52the four atoms that are required to calculate the phi dihedral for residue 52. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi53: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-53the four atoms that are required to calculate the psi dihedral for residue 53. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi53: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-53the four atoms that are required to calculate the phi dihedral for residue 53. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi54: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-54the four atoms that are required to calculate the psi dihedral for residue 54. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi54: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-54the four atoms that are required to calculate the phi dihedral for residue 54. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi55: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-55the four atoms that are required to calculate the psi dihedral for residue 55. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi55: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-55the four atoms that are required to calculate the phi dihedral for residue 55. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi56: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-56the four atoms that are required to calculate the psi dihedral for residue 56. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi56: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-56the four atoms that are required to calculate the phi dihedral for residue 56. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi57: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-57the four atoms that are required to calculate the psi dihedral for residue 57. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi57: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-57the four atoms that are required to calculate the phi dihedral for residue 57. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi58: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-58the four atoms that are required to calculate the psi dihedral for residue 58. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi58: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-58the four atoms that are required to calculate the phi dihedral for residue 58. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi59: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-59the four atoms that are required to calculate the psi dihedral for residue 59. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi59: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-59the four atoms that are required to calculate the phi dihedral for residue 59. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi60: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-60the four atoms that are required to calculate the psi dihedral for residue 60. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi60: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-60the four atoms that are required to calculate the phi dihedral for residue 60. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi61: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-61the four atoms that are required to calculate the psi dihedral for residue 61. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi61: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-61the four atoms that are required to calculate the phi dihedral for residue 61. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi62: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-62the four atoms that are required to calculate the psi dihedral for residue 62. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi62: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-62the four atoms that are required to calculate the phi dihedral for residue 62. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi63: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-63the four atoms that are required to calculate the psi dihedral for residue 63. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi63: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-63the four atoms that are required to calculate the phi dihedral for residue 63. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi64: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-64the four atoms that are required to calculate the psi dihedral for residue 64. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi64: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-64the four atoms that are required to calculate the phi dihedral for residue 64. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi65: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-65the four atoms that are required to calculate the psi dihedral for residue 65. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi65: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-65the four atoms that are required to calculate the phi dihedral for residue 65. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi66: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-66the four atoms that are required to calculate the psi dihedral for residue 66. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi66: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-66the four atoms that are required to calculate the phi dihedral for residue 66. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi67: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-67the four atoms that are required to calculate the psi dihedral for residue 67. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi67: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-67the four atoms that are required to calculate the phi dihedral for residue 67. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi68: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-68the four atoms that are required to calculate the psi dihedral for residue 68. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi68: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-68the four atoms that are required to calculate the phi dihedral for residue 68. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi69: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-69the four atoms that are required to calculate the psi dihedral for residue 69. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi69: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-69the four atoms that are required to calculate the phi dihedral for residue 69. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances psi70: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@psi-70the four atoms that are required to calculate the psi dihedral for residue 70. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi70: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-70the four atoms that are required to calculate the phi dihedral for residue 70. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances phi71: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=@phi-71the four atoms that are required to calculate the phi dihedral for residue 71. Click here for more information. NOPBC ignore the periodic boundary conditions when calculating distances
PBMETADUsed to performed Parallel Bias metadynamics. More details ... ARGthe labels of the scalars on which the bias will act=rg,psi1,psi2,phi2,psi3,phi3,psi4,phi4,psi5,phi5,psi6,phi6,psi7,phi7,psi8,phi8,psi9,phi9,psi10,phi10,psi11,phi11,psi12,phi12,psi13,phi13,psi14,phi14,psi15,phi15,psi16,phi16,psi17,phi17,psi18,phi18,psi19,phi19,psi20,phi20,psi21,phi21,psi22,phi22,psi23,phi23,psi24,phi24,psi25,phi25,psi26,phi26,psi27,phi27,psi28,phi28,psi29,phi29,psi30,phi30,psi31,phi31,psi32,phi32,psi33,phi33,psi34,phi34,psi35,phi35,psi36,phi36,psi37,phi37,psi38,phi38,psi39,phi39,psi40,phi40,psi41,phi41,psi42,phi42,psi43,phi43,psi44,phi44,psi45,phi45,psi46,phi46,psi47,phi47,psi48,phi48,psi49,phi49,psi50,phi50,psi51,phi51,psi52,phi52,psi53,phi53,psi54,phi54,psi55,phi55,psi56,phi56,psi57,phi57,psi58,phi58,psi59,phi59,psi60,phi60,psi61,phi61,psi62,phi62,psi63,phi63,psi64,phi64,psi65,phi65,psi66,phi66,psi67,phi67,psi68,phi68,psi69,phi69,psi70,phi70,phi71 ADAPTIVEuse a geometric (=GEOM) or diffusion (=DIFF) based hills width scheme=DIFF SIGMAthe widths of the Gaussian hills=1000 PACEthe frequency for hill addition, one for all biases=200 HEIGHTthe height of the Gaussian hills, one for all biases=0.3 BIASFACTORuse well tempered metadynamics with this bias factor, one for all biases=32 LABELa label for the action so that its output can be referenced in the input to other actions=pb SIGMA_MINthe lower bounds for the sigmas (in CV units) when using adaptive hills=0.001,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05 SIGMA_MAXthe upper bounds for the sigmas (in CV units) when using adaptive hills=0.04,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6,0.6 INTERVAL_MINone dimensional lower limits, outside the limits the system will not feel the biasing force=1.3,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi INTERVAL_MAXone dimensional upper limits, outside the limits the system will not feel the biasing force=4.0,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi GRID_MINthe lower bounds for the grid=1.0,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi GRID_MAXthe upper bounds for the grid=5.5,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi GRID_WSTRIDEfrequency for dumping the grid=5000000 WALKERS_MPI Switch on MPI version of multiple walkers - not compatible with WALKERS_* options other than WALKERS_DIR ... PBMETAD