Project ID: plumID:22.025
Name: Bubble nucleation rate predictions in a Lennard-Jones fluid
Archive: https://github.com/kbal/bubblenucleation/archive/main.zip (browse)
Category: materials
Keywords: free energies, kinetics, reweighted Jarzynski sampling, neural network, nucleation
PLUMED version: 2.8
Contributor: Kristof Bal
Submitted on: 31 May 2022
Last revised: 19 Nov 2022
Publication: K. M. Bal, E. C. Neyts, Extending and validating bubble nucleation rate predictions in a Lennard-Jones fluid with enhanced sampling methods and transition state theory. The Journal of Chemical Physics. 157, 184113 (2022)

PLUMED input files

File Compatible with
p0.026/t0.8600-fes/plumed.inp tested on v2.8 tested on master with LOAD
p0.026/t0.8660-fes/plumed.inp tested on v2.8 tested on master with LOAD
p0.026/t0.8675-fes/plumed.inp tested on v2.8 tested on master with LOAD
p0.026/t0.8640-fes/plumed.inp tested on v2.8 tested on master with LOAD
p0.026/t0.8680-fes/plumed.inp tested on v2.8 tested on master with LOAD
p0.026/t0.8580-smd/plumed1.inp tested on v2.8 tested on master
p0.026/t0.8580-smd/plumed2.inp tested on v2.8 tested on master
p0.026/t0.8580-fes/plumed.inp tested on v2.8 tested on master with LOAD
p0.026/t0.8580-recross/plumed1.inp tested on v2.8 tested on master
p0.026/t0.8580-recross/plumed2.inp tested on v2.8 tested on master
t0.700/p0.14000-smd/plumed1.inp tested on v2.8 tested on master
t0.700/p0.14000-smd/plumed2.inp tested on v2.8 tested on master
t0.700/p0.14000-fes/plumed.inp tested on v2.8 tested on master with LOAD
t0.700/p0.16627-fes/plumed.inp tested on v2.8 tested on master with LOAD
t0.700/p0.16222-fes/plumed.inp tested on v2.8 tested on master with LOAD
t0.700/p0.14724-fes/plumed.inp tested on v2.8 tested on master with LOAD
t0.700/p0.15808-fes/plumed.inp tested on v2.8 tested on master with LOAD
t0.700/p0.15000-fes/plumed.inp tested on v2.8 tested on master with LOAD
t0.855/p0.026-fes/plumed.inp tested on v2.8 tested on master with LOAD
t0.855/p0.026-smd/plumed1.inp tested on v2.8 tested on master

Last tested: 19 Nov 2022, 10:49:37

Project description and instructions
LAMMPS and PLUMED input files for calculation of bubble nucleation rates in Lennard-Jones fluids. Combines the reweighted Jarzynski sampling recipe with recrossing-corrected TST for rate calculation. Python with scikit-learn is also needed for intermediate processing. See README for more details.

Submission history
[v1] 31 May 2022: original submission
[v2] 19 Nov 2022: updated reference

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