Project ID: plumID:22.000
Name: Amyloid precursor protein processing by human γ-secretase
Archive: https://github.com/Xiaoli-Lu/APP-PS1/raw/master/plumed-nest-data/APP-PS1_BEMD.zip
Category: bio
Keywords: Bias Exchange Metadynamics, Helix unfolding, coupled binding
PLUMED version: 2.5
Contributor: Xiaoli Lu
Submitted on: 01 Jan 2022
Publication: unpublished

PLUMED input files

File Compatible with
plumed-1.0.dat tested on v2.8 tested on master
plumed-1.1.dat tested on v2.8 tested on master
plumed-1.2.dat tested on v2.8 tested on master
plumed-1.3.dat tested on v2.8 tested on master
plumed-1.4.dat tested on v2.8 tested on master
plumed-1.5.dat tested on v2.8 tested on master
plumed-1.6.dat tested on v2.8 tested on master
plumed-1.7.dat tested on v2.8 tested on master
plumed-2.0.dat tested on v2.8 tested on master
plumed-2.1.dat tested on v2.8 tested on master
plumed-2.2.dat tested on v2.8 tested on master
plumed-2.3.dat tested on v2.8 tested on master
plumed-3.0.dat tested on v2.8 tested on master
plumed-3.1.dat tested on v2.8 tested on master
plumed-3.2.dat tested on v2.8 tested on master
plumed-common-1.dat tested on v2.8 tested on master
plumed-common-2.dat tested on v2.8 tested on master
plumed-common-3.dat tested on v2.8 tested on master

Last tested: 19 Nov 2022, 10:50:36

Project description and instructions
Input files for BEMD simulations. Simulations were performed with GROMACS 2018 and PLUMED 2.5. Example .mdp files provided in the archive.

Submission history
[v1] 01 Jan 2022: original submission

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plumeDnest:22.000