Project ID: plumID:20.034
Name: Conformational Ensembles of Non-Coding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations
Archive: https://github.com/sbottaro/COVID_RNA/raw/main/NEST.zip
Category: bio
Keywords: RNA, SARS-CoV-2, partial tempering
PLUMED version: 2.5.3
Contributor: Sandro Bottaro
Submitted on: 11 Dec 2020
Last revised: 04 Aug 2021
Publication: S. Bottaro, G. Bussi, K. Lindorff-Larsen, Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations, Journal of the American Chemical Society 143, 8333–8343 (2021)

PLUMED input files

File Compatible with
plumed_SL1.dat tested on v2.8 tested on master
plumed_SL2.dat tested on v2.8 tested on master
plumed_SL23.dat tested on v2.8 tested on master
plumed_SL4.dat tested on v2.8 tested on master
plumed_SL5A.dat tested on v2.8 tested on master

Last tested: 30 Nov 2021, 15:33:38

Project description and instructions
GROMACS 2019.4 patched with PLUMED 2.5.3.

Submission history
[v1] 11 Dec 2020: original submission
[v2] 04 Aug 2021: updated doi

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plumeDnest:20.034