Project ID: plumID:20.014
Name: amyloid beta small molecule interaction
Keywords: intrinsically disordered proteins, disordered proteins, IDPs, fuzzy binding, small molecule, drugs, entropy, binding, Alzheimer’s disease, amyloid beta
PLUMED version: 2.6.0
Contributor: Gabriella Heller
Submitted on: 08 May 2020
Publication: G. T. Heller et al., Small molecule sequestration of amyloid-β as a drug discovery strategy for Alzheimer’s disease, (2019)
PLUMED input files
Last tested: 03 Jun 2020, 17:10:00
Project description and instructions
This study uses metadynamic metainference simulations restrained with NMR chemical shift data to determine the bound and unbound ensembles of a disordered peptide (amyloid beta) in the presence and absence of a small, drug-like molecule. We used PLUMED version 2.6.0 and GROMACS 2018.3.
[v1] 08 May 2020: original submission
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