Project ID: plumID:19.074
Name: Asymmetric base pair opening in nucleic acids
Archive: https://github.com/bussilab/plumed-nest-colizzi-2019/archive/ae2f9a3ccedfc122cabc983a2d8f6ff02e2f5638.zip (browse)
Checksum (md5): 4426abdb18ef478ee210743389c33b14
Category: bio
Keywords: double helix, DNA, RNA, unwindability
PLUMED version: 2.5
Contributor: Giovanni Bussi
Submitted on: 04 Oct 2019
Last revised: 20 Oct 2019
Publication: F. Colizzi, C. Perez-Gonzalez, R. Fritzen, Y. Levy, M. F. White, J. C. Penedo, G. Bussi, Asymmetric base-pair opening drives helicase unwinding dynamics. Proceedings of the National Academy of Sciences. 116, 22471–22477 (2019)
PLUMED input files
Last tested: 06 Feb 2025, 16:15:23
Project description and instructions
Input files for unzipping simulations. Original simulations were done using PLUMED 1.3. This egg contains input files translated to PLUMED 2 syntax. Original input files can be seen in comments. Paper is just accepted.
Submission history
[v1] 04 Oct 2019: original submission
[v2] 20 Oct 2019: updated doi
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