Project ID: plumID:19.020
Name: PTMetaD-WTE simulation of the Ntail IDP
Archive: https://github.com/mbernett/zip_for_nest/raw/master/Ntail.zip
Category: bio
Keywords: metadynamics, IDPs, protein folding
PLUMED version: 2.2
Contributor: Mattia Bernetti
Submitted on: 26 Apr 2019
Publication: ml><body><h1>503 Service Unavailable</h1>
No server is available to handle this request.
</body></html
PLUMED input files
Last tested: 15 Oct 2019, 20:06:31
Project description and instructions
Input files for the simulation of the Ntail IDP using the PTMetaD-WTE scheme. The zip comprises two directories: step-1 and step-2. The former contains the equilibrated .gro files at each of the 8 temperatures considered, plus the plumed..dat necessary to enlarge the fluctuations of the potential energy by sampling the well-tempered ensemble (WTE) along with the GROMACS (version 4.6.7) .mdp files needed to launch the simulation. The second directory includes the plumed..dat files to subsequently combine this PT-WTE scheme with a metadynamics simulation using the radius of gyration and the alpha helical content as CVs, resulting in the PTMetaD-WTE framework.
Submission history
[v1] 26 Apr 2019: original submission
Badge
Click on the image below and get the code to add the badge to your website!
