Project ID: plumID:19.020
Name: PTMetaD-WTE simulation of the Ntail IDP
Archive: https://github.com/mbernett/zip_for_nest/raw/master/Ntail.zip
Category: bio
Keywords: metadynamics, IDPs, protein folding
PLUMED version: 2.2
Contributor: Mattia Bernetti
Submitted on: 26 Apr 2019
Publication: ml><body><h1>503 Service Unavailable</h1> No server is available to handle this request. </body></html

PLUMED input files

File Compatible with
step-1/plumed.0.dat tested on v2.6 tested on master
step-1/plumed.1.dat tested on v2.6 tested on master
step-1/plumed.2.dat tested on v2.6 tested on master
step-1/plumed.3.dat tested on v2.6 tested on master
step-1/plumed.4.dat tested on v2.6 tested on master
step-1/plumed.5.dat tested on v2.6 tested on master
step-1/plumed.6.dat tested on v2.6 tested on master
step-1/plumed.7.dat tested on v2.6 tested on master
step-2/plumed.0.dat tested on v2.6 tested on master
step-2/plumed.1.dat tested on v2.6 tested on master
step-2/plumed.2.dat tested on v2.6 tested on master
step-2/plumed.3.dat tested on v2.6 tested on master
step-2/plumed.4.dat tested on v2.6 tested on master
step-2/plumed.5.dat tested on v2.6 tested on master
step-2/plumed.6.dat tested on v2.6 tested on master
step-2/plumed.7.dat tested on v2.6 tested on master

Last tested: 15 Oct 2019, 20:06:31

Project description and instructions
Input files for the simulation of the Ntail IDP using the PTMetaD-WTE scheme. The zip comprises two directories: step-1 and step-2. The former contains the equilibrated .gro files at each of the 8 temperatures considered, plus the plumed..dat necessary to enlarge the fluctuations of the potential energy by sampling the well-tempered ensemble (WTE) along with the GROMACS (version 4.6.7) .mdp files needed to launch the simulation. The second directory includes the plumed..dat files to subsequently combine this PT-WTE scheme with a metadynamics simulation using the radius of gyration and the alpha helical content as CVs, resulting in the PTMetaD-WTE framework.

Submission history
[v1] 26 Apr 2019: original submission

Badge
Click on the image below and get the code to add the badge to your website!
plumeDnest:19.020