Project ID: plumID:19.013
Source: apply_corrections/plumed.dat
Originally used with PLUMED version: 2.4
Stable: zipped raw stdout - zipped raw stderr - stderr
Master: zipped raw stdout - zipped raw stderr - stderr
Click on the labels of the actions for more information on what each action computes
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# vim: ft=plumedEnables syntax highlighting for PLUMED files in vim. See here for more details.INCLUDEIncludes an external input file, similar to #include in C preprocessor. More details. Show included fileFILE=cv.dat # The command: # INCLUDE FILE=cv.dat # ensures PLUMED loads the contents of the file called cv.dat # The contents of this file are shown below (click the red comment to hide them).file to be includedMOLINFOThis command is used to provide information on the molecules that are present in your system. More detailsSTRUCTURE=AAAA.pdba file in pdb format containing a reference structureMOLTYPE=rna #Number of total residues: 4 #Number of biased residues: 4 ########################### #### Torsions ########################### #### alpha a2:what kind of molecule is contained in the pdb file - usually not needed since protein/RNA/DNA are compatibleTORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@alpha-2#biased The TORSION action with label a2 calculates a scalar quantitya3:the four atoms that are required to calculate the alpha backbone dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@alpha-3#biased The TORSION action with label a3 calculates a scalar quantitya4:the four atoms that are required to calculate the alpha backbone dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@alpha-4#biased #### beta The TORSION action with label a4 calculates a scalar quantityb2:the four atoms that are required to calculate the alpha backbone dihedral for residue 4. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@beta-2#biased The TORSION action with label b2 calculates a scalar quantityb3:the four atoms that are required to calculate the beta backbone dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@beta-3#biased The TORSION action with label b3 calculates a scalar quantityb4:the four atoms that are required to calculate the beta backbone dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@beta-4#biased #### gamma The TORSION action with label b4 calculates a scalar quantityg1:the four atoms that are required to calculate the beta backbone dihedral for residue 4. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@gamma-1#biased The TORSION action with label g1 calculates a scalar quantityg2:the four atoms that are required to calculate the gamma backbone dihedral for residue 1. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@gamma-2#biased The TORSION action with label g2 calculates a scalar quantityg3:the four atoms that are required to calculate the gamma backbone dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@gamma-3#biased The TORSION action with label g3 calculates a scalar quantityg4:the four atoms that are required to calculate the gamma backbone dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@gamma-4#biased #### epsilon The TORSION action with label g4 calculates a scalar quantitye1:the four atoms that are required to calculate the gamma backbone dihedral for residue 4. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@epsilon-1#biased The TORSION action with label e1 calculates a scalar quantitye2:the four atoms that are required to calculate the backbone epsilon dihedral for residue 1. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@epsilon-2#biased The TORSION action with label e2 calculates a scalar quantitye3:the four atoms that are required to calculate the backbone epsilon dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@epsilon-3#biased #### zeta The TORSION action with label e3 calculates a scalar quantityz1:the four atoms that are required to calculate the backbone epsilon dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@zeta-1#biased The TORSION action with label z1 calculates a scalar quantityz2:the four atoms that are required to calculate the zeta backbone dihedral for residue 1. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@zeta-2#biased The TORSION action with label z2 calculates a scalar quantityz3:the four atoms that are required to calculate the zeta backbone dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@zeta-3#biased #### chi The TORSION action with label z3 calculates a scalar quantityc1:the four atoms that are required to calculate the zeta backbone dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@chi-1#biased The TORSION action with label c1 calculates a scalar quantityc2:the four atoms that are required to alcullate the chi dihedral for residue 1. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@chi-2#biased The TORSION action with label c2 calculates a scalar quantityc3:the four atoms that are required to alcullate the chi dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@chi-3#biased The TORSION action with label c3 calculates a scalar quantityc4:the four atoms that are required to alcullate the chi dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@chi-4#biased ########################### #### Puckering ###########################the four atoms that are required to alcullate the chi dihedral for residue 4. Click here for more information.
The TORSION action with label c4 calculates a scalar quantitypuck1:PUCKERINGCalculate sugar pseudorotation coordinates. More detailsATOMS=the five or six atoms of the sugar ring in the proper order@sugar-1#biased The PUCKERING action with label puck1 calculates the following quantities:the heavy atoms of the sugar in residue 1. Click here for more information.puck2:
Quantity Description puck1.phs Pseudorotation phase (5 membered rings) puck1.amp Pseudorotation amplitude (5 membered rings) puck1.Zx Pseudorotation x Cartesian component (5 membered rings) puck1.Zy Pseudorotation y Cartesian component (5 membered rings) puck1.phi Pseudorotation phase (6 membered rings) puck1.theta Theta angle (6 membered rings) puck1.amplitude Pseudorotation amplitude (6 membered rings) puck1.qx Cartesian component x (6 membered rings) puck1.qy Cartesian component y (6 membered rings) puck1.qz Cartesian component z (6 membered rings) PUCKERINGCalculate sugar pseudorotation coordinates. More detailsATOMS=the five or six atoms of the sugar ring in the proper order@sugar-2#biased The PUCKERING action with label puck2 calculates the following quantities:the heavy atoms of the sugar in residue 2. Click here for more information.puck3:
Quantity Description puck2.phs Pseudorotation phase (5 membered rings) puck2.amp Pseudorotation amplitude (5 membered rings) puck2.Zx Pseudorotation x Cartesian component (5 membered rings) puck2.Zy Pseudorotation y Cartesian component (5 membered rings) puck2.phi Pseudorotation phase (6 membered rings) puck2.theta Theta angle (6 membered rings) puck2.amplitude Pseudorotation amplitude (6 membered rings) puck2.qx Cartesian component x (6 membered rings) puck2.qy Cartesian component y (6 membered rings) puck2.qz Cartesian component z (6 membered rings) PUCKERINGCalculate sugar pseudorotation coordinates. More detailsATOMS=the five or six atoms of the sugar ring in the proper order@sugar-3#biased The PUCKERING action with label puck3 calculates the following quantities:the heavy atoms of the sugar in residue 3. Click here for more information.puck4:
Quantity Description puck3.phs Pseudorotation phase (5 membered rings) puck3.amp Pseudorotation amplitude (5 membered rings) puck3.Zx Pseudorotation x Cartesian component (5 membered rings) puck3.Zy Pseudorotation y Cartesian component (5 membered rings) puck3.phi Pseudorotation phase (6 membered rings) puck3.theta Theta angle (6 membered rings) puck3.amplitude Pseudorotation amplitude (6 membered rings) puck3.qx Cartesian component x (6 membered rings) puck3.qy Cartesian component y (6 membered rings) puck3.qz Cartesian component z (6 membered rings) PUCKERINGCalculate sugar pseudorotation coordinates. More detailsATOMS=the five or six atoms of the sugar ring in the proper order@sugar-4#biased # --- End of included input --- The PUCKERING action with label puck4 calculates the following quantities:the heavy atoms of the sugar in residue 4. Click here for more information.
Quantity Description puck4.phs Pseudorotation phase (5 membered rings) puck4.amp Pseudorotation amplitude (5 membered rings) puck4.Zx Pseudorotation x Cartesian component (5 membered rings) puck4.Zy Pseudorotation y Cartesian component (5 membered rings) puck4.phi Pseudorotation phase (6 membered rings) puck4.theta Theta angle (6 membered rings) puck4.amplitude Pseudorotation amplitude (6 membered rings) puck4.qx Cartesian component x (6 membered rings) puck4.qy Cartesian component y (6 membered rings) puck4.qz Cartesian component z (6 membered rings) INCLUDEIncludes an external input file, similar to #include in C preprocessor. More details. Show included fileFILE=bias # The command: # INCLUDE FILE=bias # ensures PLUMED loads the contents of the file called bias # The contents of this file are shown below (click the red comment to hide them).file to be included# vim: ft=plumedalpha2:Enables syntax highlighting for PLUMED files in vim. See here for more details.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@alpha-2The TORSION action with label alpha2 calculates a scalar quantitybeta2:the four atoms that are required to calculate the alpha backbone dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@beta-2The TORSION action with label beta2 calculates a scalar quantityalpha3:the four atoms that are required to calculate the beta backbone dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@alpha-3The TORSION action with label alpha3 calculates a scalar quantitybeta3:the four atoms that are required to calculate the alpha backbone dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@beta-3The TORSION action with label beta3 calculates a scalar quantityalpha4:the four atoms that are required to calculate the beta backbone dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@alpha-4The TORSION action with label alpha4 calculates a scalar quantitybeta4:the four atoms that are required to calculate the alpha backbone dihedral for residue 4. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@beta-4The TORSION action with label beta4 calculates a scalar quantitychi1:the four atoms that are required to calculate the beta backbone dihedral for residue 4. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@chi-1The TORSION action with label chi1 calculates a scalar quantitychi2:the four atoms that are required to alcullate the chi dihedral for residue 1. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@chi-2The TORSION action with label chi2 calculates a scalar quantitychi3:the four atoms that are required to alcullate the chi dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@chi-3The TORSION action with label chi3 calculates a scalar quantitychi4:the four atoms that are required to alcullate the chi dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@chi-4The TORSION action with label chi4 calculates a scalar quantityzeta1:the four atoms that are required to alcullate the chi dihedral for residue 4. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@zeta-1The TORSION action with label zeta1 calculates a scalar quantityepsilon1:the four atoms that are required to calculate the zeta backbone dihedral for residue 1. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@epsilon-1The TORSION action with label epsilon1 calculates a scalar quantityzeta2:the four atoms that are required to calculate the backbone epsilon dihedral for residue 1. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@zeta-2The TORSION action with label zeta2 calculates a scalar quantityepsilon2:the four atoms that are required to calculate the zeta backbone dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@epsilon-2The TORSION action with label epsilon2 calculates a scalar quantityzeta3:the four atoms that are required to calculate the backbone epsilon dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@zeta-3The TORSION action with label zeta3 calculates a scalar quantityepsilon3:the four atoms that are required to calculate the zeta backbone dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@epsilon-3The TORSION action with label epsilon3 calculates a scalar quantitygamma1:the four atoms that are required to calculate the backbone epsilon dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@gamma-1The TORSION action with label gamma1 calculates a scalar quantitydelta1:the four atoms that are required to calculate the gamma backbone dihedral for residue 1. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@delta-1The TORSION action with label delta1 calculates a scalar quantitygamma2:the four atoms that are required to calculate the delta backbone dihedral for residue 1. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@gamma-2The TORSION action with label gamma2 calculates a scalar quantitydelta2:the four atoms that are required to calculate the gamma backbone dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@delta-2The TORSION action with label delta2 calculates a scalar quantitygamma3:the four atoms that are required to calculate the delta backbone dihedral for residue 2. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@gamma-3The TORSION action with label gamma3 calculates a scalar quantitydelta3:the four atoms that are required to calculate the gamma backbone dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@delta-3The TORSION action with label delta3 calculates a scalar quantitygamma4:the four atoms that are required to calculate the delta backbone dihedral for residue 3. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@gamma-4The TORSION action with label gamma4 calculates a scalar quantitydelta4:the four atoms that are required to calculate the gamma backbone dihedral for residue 4. Click here for more information.TORSIONCalculate a torsional angle. More detailsATOMS=the four atoms involved in the torsional angle@delta-4The TORSION action with label delta4 calculates a scalar quantitysumcosalpha:the four atoms that are required to calculate the delta backbone dihedral for residue 4. Click here for more information.MATHEVALAn alias to the ef CUSTOM function. More detailsARG=alpha2,alpha3,alpha4the input to this functionVAR=v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(1*v2)+cos(1*v3)+cos(1*v4the function you wish to evaluatePERIODIC=NO sumsinalpha:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=alpha2,alpha3,alpha4the input to this functionVAR=v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(1*v2)+sin(1*v3)+sin(1*v4the function you wish to evaluatePERIODIC=NO 2sumcosalpha:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=alpha2,alpha3,alpha4the input to this functionVAR=v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(2*v2)+cos(2*v3)+cos(2*v4the function you wish to evaluatePERIODIC=NO 2sumsinalpha:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=alpha2,alpha3,alpha4the input to this functionVAR=v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(2*v2)+sin(2*v3)+sin(2*v4the function you wish to evaluatePERIODIC=NO 3sumcosalpha:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=alpha2,alpha3,alpha4the input to this functionVAR=v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(3*v2)+cos(3*v3)+cos(3*v4the function you wish to evaluatePERIODIC=NO 3sumsinalpha:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=alpha2,alpha3,alpha4the input to this functionVAR=v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(3*v2)+sin(3*v3)+sin(3*v4the function you wish to evaluatePERIODIC=NO sumcosbeta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=beta2,beta3,beta4the input to this functionVAR=v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(1*v2)+cos(1*v3)+cos(1*v4the function you wish to evaluatePERIODIC=NO sumsinbeta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=beta2,beta3,beta4the input to this functionVAR=v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(1*v2)+sin(1*v3)+sin(1*v4the function you wish to evaluatePERIODIC=NO 2sumcosbeta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=beta2,beta3,beta4the input to this functionVAR=v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(2*v2)+cos(2*v3)+cos(2*v4the function you wish to evaluatePERIODIC=NO 2sumsinbeta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=beta2,beta3,beta4the input to this functionVAR=v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(2*v2)+sin(2*v3)+sin(2*v4the function you wish to evaluatePERIODIC=NO 3sumcosbeta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=beta2,beta3,beta4the input to this functionVAR=v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(3*v2)+cos(3*v3)+cos(3*v4the function you wish to evaluatePERIODIC=NO 3sumsinbeta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=beta2,beta3,beta4the input to this functionVAR=v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(3*v2)+sin(3*v3)+sin(3*v4the function you wish to evaluatePERIODIC=NO sumcosgamma:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=gamma1,gamma2,gamma3,gamma4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(1*v1)+cos(1*v2)+cos(1*v3)+cos(1*v4the function you wish to evaluatePERIODIC=NO sumsingamma:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=gamma1,gamma2,gamma3,gamma4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(1*v1)+sin(1*v2)+sin(1*v3)+sin(1*v4the function you wish to evaluatePERIODIC=NO 2sumcosgamma:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=gamma1,gamma2,gamma3,gamma4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(2*v1)+cos(2*v2)+cos(2*v3)+cos(2*v4the function you wish to evaluatePERIODIC=NO 2sumsingamma:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=gamma1,gamma2,gamma3,gamma4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(2*v1)+sin(2*v2)+sin(2*v3)+sin(2*v4the function you wish to evaluatePERIODIC=NO 3sumcosgamma:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=gamma1,gamma2,gamma3,gamma4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(3*v1)+cos(3*v2)+cos(3*v3)+cos(3*v4the function you wish to evaluatePERIODIC=NO 3sumsingamma:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=gamma1,gamma2,gamma3,gamma4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(3*v1)+sin(3*v2)+sin(3*v3)+sin(3*v4the function you wish to evaluatePERIODIC=NO sumcosdelta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=delta1,delta2,delta3,delta4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(1*v1)+cos(1*v2)+cos(1*v3)+cos(1*v4the function you wish to evaluatePERIODIC=NO sumsindelta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=delta1,delta2,delta3,delta4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(1*v1)+sin(1*v2)+sin(1*v3)+sin(1*v4the function you wish to evaluatePERIODIC=NO 2sumcosdelta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=delta1,delta2,delta3,delta4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(2*v1)+cos(2*v2)+cos(2*v3)+cos(2*v4the function you wish to evaluatePERIODIC=NO 2sumsindelta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=delta1,delta2,delta3,delta4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(2*v1)+sin(2*v2)+sin(2*v3)+sin(2*v4the function you wish to evaluatePERIODIC=NO 3sumcosdelta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=delta1,delta2,delta3,delta4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(3*v1)+cos(3*v2)+cos(3*v3)+cos(3*v4the function you wish to evaluatePERIODIC=NO 3sumsindelta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=delta1,delta2,delta3,delta4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(3*v1)+sin(3*v2)+sin(3*v3)+sin(3*v4the function you wish to evaluatePERIODIC=NO sumcosepsilon:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=epsilon1,epsilon2,epsilon3the input to this functionVAR=v1,v2,v3the names to give each of the arguments in the functionFUNC=cos(1*v1)+cos(1*v2)+cos(1*v3the function you wish to evaluatePERIODIC=NO sumsinepsilon:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=epsilon1,epsilon2,epsilon3the input to this functionVAR=v1,v2,v3the names to give each of the arguments in the functionFUNC=sin(1*v1)+sin(1*v2)+sin(1*v3the function you wish to evaluatePERIODIC=NO 2sumcosepsilon:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=epsilon1,epsilon2,epsilon3the input to this functionVAR=v1,v2,v3the names to give each of the arguments in the functionFUNC=cos(2*v1)+cos(2*v2)+cos(2*v3the function you wish to evaluatePERIODIC=NO 2sumsinepsilon:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=epsilon1,epsilon2,epsilon3the input to this functionVAR=v1,v2,v3the names to give each of the arguments in the functionFUNC=sin(2*v1)+sin(2*v2)+sin(2*v3the function you wish to evaluatePERIODIC=NO 3sumcosepsilon:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=epsilon1,epsilon2,epsilon3the input to this functionVAR=v1,v2,v3the names to give each of the arguments in the functionFUNC=cos(3*v1)+cos(3*v2)+cos(3*v3the function you wish to evaluatePERIODIC=NO 3sumsinepsilon:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=epsilon1,epsilon2,epsilon3the input to this functionVAR=v1,v2,v3the names to give each of the arguments in the functionFUNC=sin(3*v1)+sin(3*v2)+sin(3*v3the function you wish to evaluatePERIODIC=NO sumcoszeta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=zeta1,zeta2,zeta3the input to this functionVAR=v1,v2,v3the names to give each of the arguments in the functionFUNC=cos(1*v1)+cos(1*v2)+cos(1*v3the function you wish to evaluatePERIODIC=NO sumsinzeta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=zeta1,zeta2,zeta3the input to this functionVAR=v1,v2,v3the names to give each of the arguments in the functionFUNC=sin(1*v1)+sin(1*v2)+sin(1*v3the function you wish to evaluatePERIODIC=NO 2sumcoszeta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=zeta1,zeta2,zeta3the input to this functionVAR=v1,v2,v3the names to give each of the arguments in the functionFUNC=cos(2*v1)+cos(2*v2)+cos(2*v3the function you wish to evaluatePERIODIC=NO 2sumsinzeta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=zeta1,zeta2,zeta3the input to this functionVAR=v1,v2,v3the names to give each of the arguments in the functionFUNC=sin(2*v1)+sin(2*v2)+sin(2*v3the function you wish to evaluatePERIODIC=NO 3sumcoszeta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=zeta1,zeta2,zeta3the input to this functionVAR=v1,v2,v3the names to give each of the arguments in the functionFUNC=cos(3*v1)+cos(3*v2)+cos(3*v3the function you wish to evaluatePERIODIC=NO 3sumsinzeta:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=zeta1,zeta2,zeta3the input to this functionVAR=v1,v2,v3the names to give each of the arguments in the functionFUNC=sin(3*v1)+sin(3*v2)+sin(3*v3the function you wish to evaluatePERIODIC=NO pursumcoschi:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=chi1,chi2,chi3,chi4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(1*v1)+cos(1*v2)+cos(1*v3)+cos(1*v4the function you wish to evaluatePERIODIC=NO 2pursumcoschi:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=chi1,chi2,chi3,chi4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(2*v1)+cos(2*v2)+cos(2*v3)+cos(2*v4the function you wish to evaluatePERIODIC=NO 3pursumcoschi:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=chi1,chi2,chi3,chi4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=cos(3*v1)+cos(3*v2)+cos(3*v3)+cos(3*v4the function you wish to evaluatePERIODIC=NO pursumsinchi:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=chi1,chi2,chi3,chi4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(1*v1)+sin(1*v2)+sin(1*v3)+sin(1*v4the function you wish to evaluatePERIODIC=NO 2pursumsinchi:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=chi1,chi2,chi3,chi4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(2*v1)+sin(2*v2)+sin(2*v3)+sin(2*v4the function you wish to evaluatePERIODIC=NO 3pursumsinchi:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=chi1,chi2,chi3,chi4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=sin(3*v1)+sin(3*v2)+sin(3*v3)+sin(3*v4the function you wish to evaluatePERIODIC=NO pyrsumcoschi:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=chi1,chi2,chi3,chi4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=0*(v1)+0*(v2)+0*(v3)+0*(v4the function you wish to evaluatePERIODIC=NO 2pyrsumcoschi:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=chi1,chi2,chi3,chi4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=0*(v1)+0*(v2)+0*(v3)+0*(v4the function you wish to evaluatePERIODIC=NO 3pyrsumcoschi:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=chi1,chi2,chi3,chi4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=0*(v1)+0*(v2)+0*(v3)+0*(v4the function you wish to evaluatePERIODIC=NO pyrsumsinchi:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=chi1,chi2,chi3,chi4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=0*(v1)+0*(v2)+0*(v3)+0*(v4the function you wish to evaluatePERIODIC=NO 2pyrsumsinchi:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=chi1,chi2,chi3,chi4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=0*(v1)+0*(v2)+0*(v3)+0*(v4the function you wish to evaluatePERIODIC=NO 3pyrsumsinchi:if the output of your function is periodic then you should specify the periodicity of the functionMATHEVALAn alias to the ef CUSTOM function. More detailsARG=chi1,chi2,chi3,chi4the input to this functionVAR=v1,v2,v3,v4the names to give each of the arguments in the functionFUNC=0*(v1)+0*(v2)+0*(v3)+0*(v4the function you wish to evaluatePERIODIC=NO kbt:if the output of your function is periodic then you should specify the periodicity of the functionCONSTANTCreate a constant value that can be passed to actions More detailsVALUE=2.5 The CONSTANT action with label kbt calculates a scalar quantitymybias:the single number that you would like to storeMATHEVALAn alias to the ef CUSTOM function. More detailsARG=kbt,sumcosalpha,sumcosbeta,sumcosgamma,sumcosdelta,sumcosepsilon,sumcoszeta,sumsinalpha,sumsinbeta,sumsingamma,sumsindelta,sumsinepsilon,sumsinzeta,pursumcoschi,pyrsumcoschi,pursumsinchi,pyrsumsinchi,2sumcosalpha,2sumcosbeta,2sumcosgamma,2sumcosdelta,2sumcosepsilon,2sumcoszeta,2sumsinalpha,2sumsinbeta,2sumsingamma,2sumsindelta,2sumsinepsilon,2sumsinzeta,2pursumcoschi,2pyrsumcoschi,2pursumsinchi,2pyrsumsinchi,3sumcosalpha,3sumcosbeta,3sumcosgamma,3sumcosdelta,3sumcosepsilon,3sumcoszeta,3sumsinalpha,3sumsinbeta,3sumsingamma,3sumsindelta,3sumsinepsilon,3sumsinzeta,3pursumcoschi,3pyrsumcoschi,3pursumsinchi,3pyrsumsinchithe input to this functionVAR=kbt,v1,v2,v3,v4,v5,v6,v7,v8,v9,v10,v11,v12,v13,v14,v15,v16,v17,v18,v19,v20,v21,v22,v23,v24,v25,v26,v27,v28,v29,v30,v31,v32,v33,v34,v35,v36,v37,v38,v39,v40,v41,v42,v43,v44,v45,v46,v47,v48the names to give each of the arguments in the functionFUNC=kbt*((0.028743*v1)+(-0.118088*v2)+(0.369240*v3)+(-0.068875*v4)+(-0.061779*v5)+(-0.083563*v6)+(0.045960*v7)+(-0.085707*v8)+(0.080645*v9)+(-0.011406*v10)+(0.038967*v11)+(0.220101*v12)+(-0.007880*v13)+(0.067727*v14)+(-0.086418*v15)+(-0.014430*v16)+(-0.135683*v17)+(0.199287*v18)+(-0.269494*v19)+(0.035808*v20)+(0.086680*v21)+(0.091654*v22)+(0.064641*v23)+(0.008920*v24)+(0.190771*v25)+(-0.109477*v26)+(0.054064*v27)+(0.150732*v28)+(-0.054599*v29)+(-0.116106*v30)+(-0.073151*v31)+(-0.046067*v32)+(0.122662*v33)+(-0.064958*v34)+(-0.001949*v35)+(0.109930*v36)+(0.042434*v37)+(0.061681*v38)+(0.032150*v39)+(0.016087*v40)+(0.020993*v41)+(0.051061*v42)+(-0.077758*v43)+(0.015956*v44)+(0.016977*v45)+(0.037457*v46)+(0.143994*v47)+(0.140334*v48the function you wish to evaluatePERIODIC=NOif the output of your function is periodic then you should specify the periodicity of the functionBIASVALUETakes the value of one variable and use it as a bias More detailsARG=mybias # --- End of included input ---the input for this action is the scalar output from one or more other actions