Project ID: plumID:19.010
Name: Multi-domain protein dynamics
Archive: https://github.com/carlocamilloni/papers-data/raw/master/zip-for-nest/2018/weber2018_LC.zip
Category: bio
Keywords: metainference, NMR, protein dynamics
PLUMED version: 2.4
Contributor: Carlo Camilloni
Submitted on: 16 Apr 2019
Publication: B. Weber, M. Hora, P. Kazman, C. Göbl, C. Camilloni, B. Reif, J. Buchner, The Antibody Light-Chain Linker Regulates Domain Orientation and Amyloidogenicity. Journal of Molecular Biology. 430, 4925–4940 (2018)
PLUMED input files
| File | Compatible with |
|---|---|
| r108a/plumed-mm.dat |   |
| r108a/plumed-orient.dat | |
| wt/plumed-mm.dat | |
| wt/plumed-orient.dat | |
Last tested: 17 Apr 2024, 07:32:04
Project description and instructions
this is a metadynamic metainference calculation using residual dipolar coupling to infere the interdomain dynamics of a two domain proteins. There are two proteins (wt and a mutant). the protoctol is in two step, first with plumed-orient.dat ones generate a good starting condition for the replicas such as that the agreement with RDCs is ok, then the proper sampling begins.
Submission history
[v1] 16 Apr 2019: original submission
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