Project ID: plumID:25.023
Stderr for source: update_2026/initial_relaxed_conf_for_metad/tetramer/plumed.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (colvar/RMSDShortcut.cpp:67) PLMD::colvar::RMSDShortcut::RMSDShortcut(const PLMD::ActionOptions&) missing file prot_ref_a.pdb [runnervm0kj6c:04826] *** Process received signal *** [runnervm0kj6c:04826] Signal: Aborted (6) [runnervm0kj6c:04826] Signal code: (-6) [runnervm0kj6c:04826] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f8c0a045330] [runnervm0kj6c:04826] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f8c0a09eb2c] [runnervm0kj6c:04826] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f8c0a04527e] [runnervm0kj6c:04826] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f8c0a0288ff] [runnervm0kj6c:04826] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5ff5)[0x7f8c0a4a5ff5] [runnervm0kj6c:04826] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xbb0da)[0x7f8c0a4bb0da] [runnervm0kj6c:04826] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt10unexpectedv+0x0)[0x7f8c0a4a5a55] [runnervm0kj6c:04826] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5a6f)[0x7f8c0a4a5a6f] [runnervm0kj6c:04826] [ 8] plumed(+0x146dd)[0x558a998c86dd] [runnervm0kj6c:04826] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f8c0a02a1ca] [runnervm0kj6c:04826] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f8c0a02a28b] [runnervm0kj6c:04826] [11] plumed(+0x15365)[0x558a998c9365] [runnervm0kj6c:04826] *** End of error message ***