PLUMED-NEST

Project ID: plumID:25.006
Source: Input_Files/Reweighting-Example/LastBiasReweighting_8microsec/plumed_lastbias.dat
Originally used with PLUMED version: 2.8.2
Stable: zipped raw stdout - zipped raw stderr - stderr
Master: zipped raw stdout - zipped raw stderr - stderr

Click on the labels of the actions for more information on what each action computes

##Reweighting

RESTARTActivate restart. More details

The RESTART action with label  calculates somethingINCLUDEIncludes an external input file, similar to #include in C preprocessor. More details. Show included file FILEfile to be included=plumed_read.dat
# The command:
# INCLUDE FILE=plumed_read.dat
# ensures PLUMED loads the contents of the file called plumed_read.dat
# The contents of this file are shown below (click the red comment to hide them).
# Colvar file: ../colvar_distances.data
The INCLUDE action with label plumed_read.dat calculates somethingd_tbut_ph_brd4:                READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_tbut_ph_brd4                
The READ action with label d_tbut_ph_brd4 calculates the following quantities:
 Quantity   
 Description  
d_tbut_ph_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_tbut_S_5ring_brd4:           READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_tbut_S_5ring_brd4           
The READ action with label d_tbut_S_5ring_brd4 calculates the following quantities:
 Quantity   
 Description  
d_tbut_S_5ring_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_tbut_N_ring_brd4:            READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_tbut_N_ring_brd4            
The READ action with label d_tbut_N_ring_brd4 calculates the following quantities:
 Quantity   
 Description  
d_tbut_N_ring_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_tbut_N_5ring_brd4:           READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_tbut_N_5ring_brd4           
The READ action with label d_tbut_N_5ring_brd4 calculates the following quantities:
 Quantity   
 Description  
d_tbut_N_5ring_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_ph_brd4_linker:              READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_ph_brd4_linker              
The READ action with label d_ph_brd4_linker calculates the following quantities:
 Quantity   
 Description  
d_ph_brd4_linker..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_ph_vhl_linker:               READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_ph_vhl_linker               
The READ action with label d_ph_vhl_linker calculates the following quantities:
 Quantity   
 Description  
d_ph_vhl_linker..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_ph_brd4_ph_vhl:              READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_ph_brd4_ph_vhl              
The READ action with label d_ph_brd4_ph_vhl calculates the following quantities:
 Quantity   
 Description  
d_ph_brd4_ph_vhl..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_ph_vhl_S_5ring_brd4:         READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_ph_vhl_S_5ring_brd4         
The READ action with label d_ph_vhl_S_5ring_brd4 calculates the following quantities:
 Quantity   
 Description  
d_ph_vhl_S_5ring_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_ph_vhl_N_ring_brd4:          READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_ph_vhl_N_ring_brd4          
The READ action with label d_ph_vhl_N_ring_brd4 calculates the following quantities:
 Quantity   
 Description  
d_ph_vhl_N_ring_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_ph_vhl_N_5ring_brd4:         READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_ph_vhl_N_5ring_brd4         
The READ action with label d_ph_vhl_N_5ring_brd4 calculates the following quantities:
 Quantity   
 Description  
d_ph_vhl_N_5ring_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_s_vhl_ph_brd4:               READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_s_vhl_ph_brd4               
The READ action with label d_s_vhl_ph_brd4 calculates the following quantities:
 Quantity   
 Description  
d_s_vhl_ph_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_s_S_5ring_brd4:              READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_s_S_5ring_brd4              
The READ action with label d_s_S_5ring_brd4 calculates the following quantities:
 Quantity   
 Description  
d_s_S_5ring_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_s_N_ring_brd4:               READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_s_N_ring_brd4               
The READ action with label d_s_N_ring_brd4 calculates the following quantities:
 Quantity   
 Description  
d_s_N_ring_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_s_N_5ring_brd4:              READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_s_N_5ring_brd4              
The READ action with label d_s_N_5ring_brd4 calculates the following quantities:
 Quantity   
 Description  
d_s_N_5ring_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_n_vhl_ph_brd4:               READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_n_vhl_ph_brd4               
The READ action with label d_n_vhl_ph_brd4 calculates the following quantities:
 Quantity   
 Description  
d_n_vhl_ph_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_n_vhl_S_5ring_brd4:          READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_n_vhl_S_5ring_brd4          
The READ action with label d_n_vhl_S_5ring_brd4 calculates the following quantities:
 Quantity   
 Description  
d_n_vhl_S_5ring_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_n_vhl_N_ring_brd4:           READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_n_vhl_N_ring_brd4           
The READ action with label d_n_vhl_N_ring_brd4 calculates the following quantities:
 Quantity   
 Description  
d_n_vhl_N_ring_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsd_n_vhl_N_5ring_brd4:          READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored   IGNORE_TIME ignore the time in the colvar file     FILEthe name of the file from which to read these quantities=../colvar_distances.data       VALUESthe values to read from the file=d_n_vhl_N_5ring_brd4          
# -------------------------------------------

# Colvar file: ../colvar_main.data
The READ action with label d_n_vhl_N_5ring_brd4 calculates the following quantities:
 Quantity   
 Description  
d_n_vhl_N_5ring_brd4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrgyr:                          READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_main.data            VALUESthe values to read from the file=rgyr                          
The READ action with label rgyr calculates the following quantities:
 Quantity   
 Description  
rgyr..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailscmap:                          READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_main.data            VALUESthe values to read from the file=cmap                          
The READ action with label cmap calculates the following quantities:
 Quantity   
 Description  
cmap..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsenergy:                        READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_main.data            VALUESthe values to read from the file=energy                        
The READ action with label energy calculates the following quantities:
 Quantity   
 Description  
energy..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsvolume:                        READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_main.data            VALUESthe values to read from the file=volume                        
# -------------------------------------------

# Colvar file: ../colvar_angles.data
The READ action with label volume calculates the following quantities:
 Quantity   
 Description  
volume..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_brd4_1:                      READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_brd4_1                      
The READ action with label t_brd4_1 calculates the following quantities:
 Quantity   
 Description  
t_brd4_1..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_brd4_2:                      READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_brd4_2                      
The READ action with label t_brd4_2 calculates the following quantities:
 Quantity   
 Description  
t_brd4_2..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_brd4_3:                      READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_brd4_3                      
The READ action with label t_brd4_3 calculates the following quantities:
 Quantity   
 Description  
t_brd4_3..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_brd4_4:                      READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_brd4_4                      
The READ action with label t_brd4_4 calculates the following quantities:
 Quantity   
 Description  
t_brd4_4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_brd4_5:                      READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_brd4_5                      
The READ action with label t_brd4_5 calculates the following quantities:
 Quantity   
 Description  
t_brd4_5..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_brd4_6:                      READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_brd4_6                      
The READ action with label t_brd4_6 calculates the following quantities:
 Quantity   
 Description  
t_brd4_6..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_brd4_7:                      READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_brd4_7                      
The READ action with label t_brd4_7 calculates the following quantities:
 Quantity   
 Description  
t_brd4_7..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_linker_1:                    READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_linker_1                    
The READ action with label t_linker_1 calculates the following quantities:
 Quantity   
 Description  
t_linker_1..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_linker_2:                    READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_linker_2                    
The READ action with label t_linker_2 calculates the following quantities:
 Quantity   
 Description  
t_linker_2..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_linker_3:                    READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_linker_3                    
The READ action with label t_linker_3 calculates the following quantities:
 Quantity   
 Description  
t_linker_3..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_linker_4:                    READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_linker_4                    
The READ action with label t_linker_4 calculates the following quantities:
 Quantity   
 Description  
t_linker_4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_linker_5:                    READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_linker_5                    
The READ action with label t_linker_5 calculates the following quantities:
 Quantity   
 Description  
t_linker_5..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_linker_6:                    READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_linker_6                    
The READ action with label t_linker_6 calculates the following quantities:
 Quantity   
 Description  
t_linker_6..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_linker_7:                    READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_linker_7                    
The READ action with label t_linker_7 calculates the following quantities:
 Quantity   
 Description  
t_linker_7..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_linker_8:                    READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_linker_8                    
The READ action with label t_linker_8 calculates the following quantities:
 Quantity   
 Description  
t_linker_8..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_linker_9:                    READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_linker_9                    
The READ action with label t_linker_9 calculates the following quantities:
 Quantity   
 Description  
t_linker_9..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_1:                       READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_1                       
The READ action with label t_vhl_1 calculates the following quantities:
 Quantity   
 Description  
t_vhl_1..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_2:                       READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_2                       
The READ action with label t_vhl_2 calculates the following quantities:
 Quantity   
 Description  
t_vhl_2..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_3:                       READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_3                       
The READ action with label t_vhl_3 calculates the following quantities:
 Quantity   
 Description  
t_vhl_3..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_4:                       READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_4                       
The READ action with label t_vhl_4 calculates the following quantities:
 Quantity   
 Description  
t_vhl_4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_5:                       READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_5                       
The READ action with label t_vhl_5 calculates the following quantities:
 Quantity   
 Description  
t_vhl_5..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_6:                       READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_6                       
The READ action with label t_vhl_6 calculates the following quantities:
 Quantity   
 Description  
t_vhl_6..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_7:                       READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_7                       
The READ action with label t_vhl_7 calculates the following quantities:
 Quantity   
 Description  
t_vhl_7..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_8:                       READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_8                       
The READ action with label t_vhl_8 calculates the following quantities:
 Quantity   
 Description  
t_vhl_8..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_9:                       READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_9                       
The READ action with label t_vhl_9 calculates the following quantities:
 Quantity   
 Description  
t_vhl_9..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_10:                      READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_10                      
The READ action with label t_vhl_10 calculates the following quantities:
 Quantity   
 Description  
t_vhl_10..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_11:                      READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_11                      
The READ action with label t_vhl_11 calculates the following quantities:
 Quantity   
 Description  
t_vhl_11..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_12:                      READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_12                      
The READ action with label t_vhl_12 calculates the following quantities:
 Quantity   
 Description  
t_vhl_12..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailst_vhl_13:                      READRead quantities from a colvar file. More details IGNORE_FORCES use this flag if the forces added by any bias can be safely ignored  IGNORE_TIME ignore the time in the colvar file      FILEthe name of the file from which to read these quantities=../colvar_angles.data          VALUESthe values to read from the file=t_vhl_13                      
# -------------------------------------------

# --- End of included input --- 
The READ action with label t_vhl_13 calculates the following quantities:
 Quantity   
 Description  
t_vhl_13..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsPBMETADUsed to performed Parallel Bias metadynamics. More details ...
 LABELa label for the action so that its output can be referenced in the input to other actions=pbmetad
 ARGthe labels of the scalars on which the bias will act=t_brd4_4,t_brd4_5,t_brd4_6,t_brd4_7,t_linker_1,t_linker_2,t_linker_3,t_linker_4,t_linker_5,t_linker_6,t_linker_7,t_linker_8,t_linker_9,t_vhl_1,t_vhl_2,t_vhl_3,t_vhl_4,t_vhl_5,t_vhl_6,t_vhl_7,t_vhl_8,t_vhl_9,t_vhl_10,t_vhl_11,t_vhl_12,t_vhl_13
 PACEthe frequency for hill addition, one for all biases=500000000
 BIASFACTORuse well tempered metadynamics with this bias factor, one for all biases=24
 HEIGHTthe height of the Gaussian hills, one for all biases=0 
 SIGMAthe widths of the Gaussian hills=0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2,0.2
 GRID_MINthe lower bounds for the grid=-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi,-pi
 GRID_MAXthe upper bounds for the grid=pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi,pi
 TEMPthe system temperature - this is only needed if you are doing well-tempered metadynamics=300
... PBMETAD


The PBMETAD action with label pbmetad calculates the following quantities:
 Quantity   
 Description  
pbmetad.bias
the instantaneous value of the bias potentialPRINTPrint quantities to a file. More details ...
 ARGthe labels of the values that you would like to print to the file=rgyr,cmap,energy,volume,pbmetad.*
 FILEthe name of the file on which to output these quantities=colvar_main.lastbias_8-microsec.data
 STRIDE the frequency with which the quantities of interest should be output=500
...

PRINTPrint quantities to a file. More details ...
 ARGthe labels of the values that you would like to print to the file=d_tbut_ph_brd4,d_tbut_S_5ring_brd4,d_tbut_N_ring_brd4,d_tbut_N_5ring_brd4,d_ph_brd4_linker,d_ph_vhl_linker,d_ph_brd4_ph_vhl,d_ph_vhl_S_5ring_brd4,d_ph_vhl_N_ring_brd4,d_ph_vhl_N_5ring_brd4,d_s_vhl_ph_brd4,d_s_S_5ring_brd4,d_s_N_ring_brd4,d_s_N_5ring_brd4,d_n_vhl_ph_brd4,d_n_vhl_S_5ring_brd4,d_n_vhl_N_ring_brd4,d_n_vhl_N_5ring_brd4,pbmetad.*
 FILEthe name of the file on which to output these quantities=colvar_distances.lastbias_8-microsec.data 
 STRIDE the frequency with which the quantities of interest should be output=500
...

PRINTPrint quantities to a file. More details ...
 ARGthe labels of the values that you would like to print to the file=t_brd4_1,t_brd4_2,t_brd4_3,t_brd4_4,t_brd4_5,t_brd4_6,t_brd4_7,t_linker_1,t_linker_2,t_linker_3,t_linker_4,t_linker_5,t_linker_6,t_linker_7,t_linker_8,t_linker_9,t_vhl_1,t_vhl_2,t_vhl_3,t_vhl_4,t_vhl_5,t_vhl_6,t_vhl_7,t_vhl_8,t_vhl_9,t_vhl_10,t_vhl_11,t_vhl_12,t_vhl_13,pbmetad.*
 FILEthe name of the file on which to output these quantities=colvar_angles.lastbias_8-microsec.data 
 STRIDE the frequency with which the quantities of interest should be output=500
...