Project ID: plumID:24.003
Source: plumed_nest/diff_sequences/CH22/plumed.dat
Originally used with PLUMED version: 2.8-mod
Stable: zipped raw stdout - zipped raw stderr - stderr
Master: zipped raw stdout - zipped raw stderr - stderr
Click on the labels of the actions for more information on what each action computes
WHOLEMOLECULESThis action is used to rebuild molecules that can become split by the periodic boundary conditions. More details ENTITY0the atoms that make up a molecule that you wish to align=1-636
The WHOLEMOLECULES action with label calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=1-304 LABELa label for the action so that its output can be referenced in the input to other actions=p1
The COM action with label p1 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=1-30 LABELa label for the action so that its output can be referenced in the input to other actions=r1
The COM action with label r1 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=280-304 LABELa label for the action so that its output can be referenced in the input to other actions=r14
The COM action with label r14 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=339-636 LABELa label for the action so that its output can be referenced in the input to other actions=p2
The COM action with label p2 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=339-364 LABELa label for the action so that its output can be referenced in the input to other actions=r16
The COM action with label r16 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=614-636 LABELa label for the action so that its output can be referenced in the input to other actions=r30
The COM action with label r30 calculates somethingDISTANCECalculate the distance/s between pairs of atoms. More details ATOMSthe pair of atom that we are calculating the distance between=p1,p2 LABELa label for the action so that its output can be referenced in the input to other actions=d
The DISTANCE action with label d calculates the following quantities: Quantity | Description |
d.value | the DISTANCE between this pair of atoms |
DISTANCECalculate the distance/s between pairs of atoms. More details ATOMSthe pair of atom that we are calculating the distance between=r14,r16 LABELa label for the action so that its output can be referenced in the input to other actions=in
The DISTANCE action with label in calculates the following quantities: Quantity | Description |
in.value | the DISTANCE between this pair of atoms |
DISTANCECalculate the distance/s between pairs of atoms. More details ATOMSthe pair of atom that we are calculating the distance between=r1,r30 LABELa label for the action so that its output can be referenced in the input to other actions=FRET
The DISTANCE action with label FRET calculates the following quantities: Quantity | Description |
FRET.value | the DISTANCE between this pair of atoms |
GYRATIONCalculate the radius of gyration, or other properties related to it. More details TYPE The type of calculation relative to the Gyration Tensor you want to perform=RADIUS ATOMSthe group of atoms that you are calculating the Gyration Tensor for=1,31,64,89,122,148,177,202,225,251,280,339,365,398,423,456,482,511,536,559,585,614 LABELa label for the action so that its output can be referenced in the input to other actions=rg
The GYRATION action with label rg calculates the following quantities: Quantity | Description |
rg.value | the radius that was computed from the weights |
GYRATIONCalculate the radius of gyration, or other properties related to it. More details TYPE The type of calculation relative to the Gyration Tensor you want to perform=RADIUS ATOMSthe group of atoms that you are calculating the Gyration Tensor for=1,31,64,89,122,148,177,202,225,251,280 LABELa label for the action so that its output can be referenced in the input to other actions=rg_1
The GYRATION action with label rg_1 calculates the following quantities: Quantity | Description |
rg_1.value | the radius that was computed from the weights |
GYRATIONCalculate the radius of gyration, or other properties related to it. More details TYPE The type of calculation relative to the Gyration Tensor you want to perform=RADIUS ATOMSthe group of atoms that you are calculating the Gyration Tensor for=339,365,398,423,456,482,511,536,559,585,614 LABELa label for the action so that its output can be referenced in the input to other actions=rg_2
The GYRATION action with label rg_2 calculates the following quantities: Quantity | Description |
rg_2.value | the radius that was computed from the weights |
COMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=31-63 LABELa label for the action so that its output can be referenced in the input to other actions=H1
The COM action with label H1 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=89-121 LABELa label for the action so that its output can be referenced in the input to other actions=H2
The COM action with label H2 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=148-176 LABELa label for the action so that its output can be referenced in the input to other actions=H3
The COM action with label H3 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=202-224 LABELa label for the action so that its output can be referenced in the input to other actions=H4
The COM action with label H4 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=251-279 LABELa label for the action so that its output can be referenced in the input to other actions=H5
The COM action with label H5 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=365-397 LABELa label for the action so that its output can be referenced in the input to other actions=H1_2
The COM action with label H1_2 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=423-455 LABELa label for the action so that its output can be referenced in the input to other actions=H2_2
The COM action with label H2_2 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=482-510 LABELa label for the action so that its output can be referenced in the input to other actions=H3_2
The COM action with label H3_2 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=536-558 LABELa label for the action so that its output can be referenced in the input to other actions=H4_2
The COM action with label H4_2 calculates somethingCOMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=585-613 LABELa label for the action so that its output can be referenced in the input to other actions=H5_2
The COM action with label H5_2 calculates somethingCOORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=H1,H2,H3,H4,H5 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=H1_2,H2_2,H3_2,H4_2,H5_2 R_0The r_0 parameter of the switching function=1.9 NLIST Use a neighbor list to speed up the calculation NL_CUTOFFThe cutoff for the neighbor list=2.2 NL_STRIDEThe frequency with which we are updating the atoms in the neighbor list=100 NN The n parameter of the switching function =20 MM The m parameter of the switching function; 0 implies 2*NN=80 LABELa label for the action so that its output can be referenced in the input to other actions=COORD
The COORDINATION action with label COORD calculates the following quantities: Quantity | Description |
COORD.value | the value of the coordination |
COORDINATIONCalculate coordination numbers. More details PAIR Pair only 1st element of the 1st group with 1st element in the second, etc GROUPAFirst list of atoms=H1,H2,H3,H4,H5 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=H5_2,H4_2,H3_2,H2_2,H1_2 R_0The r_0 parameter of the switching function=1.9 NLIST Use a neighbor list to speed up the calculation NL_CUTOFFThe cutoff for the neighbor list=2.2 NL_STRIDEThe frequency with which we are updating the atoms in the neighbor list=100 NN The n parameter of the switching function =20 MM The m parameter of the switching function; 0 implies 2*NN=80 LABELa label for the action so that its output can be referenced in the input to other actions=PAIR
The COORDINATION action with label PAIR calculates the following quantities: Quantity | Description |
PAIR.value | the value of the coordination |
INCLUDEIncludes an external input file, similar to #include in C preprocessor. More details. Show included file FILEfile to be included=dihedral.dat
# INCLUDE FILE=dihedral.dat
The INCLUDE action with label dihedral.dat calculates somethingphi1: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=29,31,59,62
The TORSION action with label phi1 calculates the following quantities: Quantity | Description |
phi1.value | the TORSION involving these atoms |
phi2: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=62,64,84,87
The TORSION action with label phi2 calculates the following quantities: Quantity | Description |
phi2.value | the TORSION involving these atoms |
phi3: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=87,89,117,120
The TORSION action with label phi3 calculates the following quantities: Quantity | Description |
phi3.value | the TORSION involving these atoms |
phi4: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=120,122,143,146
The TORSION action with label phi4 calculates the following quantities: Quantity | Description |
phi4.value | the TORSION involving these atoms |
phi5: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=146,148,172,175
The TORSION action with label phi5 calculates the following quantities: Quantity | Description |
phi5.value | the TORSION involving these atoms |
phi6: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=175,177,197,200
The TORSION action with label phi6 calculates the following quantities: Quantity | Description |
phi6.value | the TORSION involving these atoms |
phi7: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=200,202,220,223
The TORSION action with label phi7 calculates the following quantities: Quantity | Description |
phi7.value | the TORSION involving these atoms |
phi8: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=223,225,246,249
The TORSION action with label phi8 calculates the following quantities: Quantity | Description |
phi8.value | the TORSION involving these atoms |
phi9: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=249,251,275,278
The TORSION action with label phi9 calculates the following quantities: Quantity | Description |
phi9.value | the TORSION involving these atoms |
phi10: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=278,280,300,303
The TORSION action with label phi10 calculates the following quantities: Quantity | Description |
phi10.value | the TORSION involving these atoms |
phi13: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=363,365,393,396
The TORSION action with label phi13 calculates the following quantities: Quantity | Description |
phi13.value | the TORSION involving these atoms |
phi14: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=396,398,418,421
The TORSION action with label phi14 calculates the following quantities: Quantity | Description |
phi14.value | the TORSION involving these atoms |
phi15: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=421,423,451,454
The TORSION action with label phi15 calculates the following quantities: Quantity | Description |
phi15.value | the TORSION involving these atoms |
phi16: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=454,456,477,480
The TORSION action with label phi16 calculates the following quantities: Quantity | Description |
phi16.value | the TORSION involving these atoms |
phi17: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=480,482,506,509
The TORSION action with label phi17 calculates the following quantities: Quantity | Description |
phi17.value | the TORSION involving these atoms |
phi18: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=509,511,531,534
The TORSION action with label phi18 calculates the following quantities: Quantity | Description |
phi18.value | the TORSION involving these atoms |
phi19: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=534,536,554,557
The TORSION action with label phi19 calculates the following quantities: Quantity | Description |
phi19.value | the TORSION involving these atoms |
phi20: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=557,559,580,583
The TORSION action with label phi20 calculates the following quantities: Quantity | Description |
phi20.value | the TORSION involving these atoms |
phi21: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=583,585,609,612
The TORSION action with label phi21 calculates the following quantities: Quantity | Description |
phi21.value | the TORSION involving these atoms |
phi22: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=612,614,629,632
The TORSION action with label phi22 calculates the following quantities: Quantity | Description |
phi22.value | the TORSION involving these atoms |
psi0: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=1,26,29,31
The TORSION action with label psi0 calculates the following quantities: Quantity | Description |
psi0.value | the TORSION involving these atoms |
psi1: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=31,59,62,64
The TORSION action with label psi1 calculates the following quantities: Quantity | Description |
psi1.value | the TORSION involving these atoms |
psi2: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=64,84,87,89
The TORSION action with label psi2 calculates the following quantities: Quantity | Description |
psi2.value | the TORSION involving these atoms |
psi3: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=89,117,120,122
The TORSION action with label psi3 calculates the following quantities: Quantity | Description |
psi3.value | the TORSION involving these atoms |
psi4: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=122,143,146,148
The TORSION action with label psi4 calculates the following quantities: Quantity | Description |
psi4.value | the TORSION involving these atoms |
psi5: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=148,172,175,177
The TORSION action with label psi5 calculates the following quantities: Quantity | Description |
psi5.value | the TORSION involving these atoms |
psi6: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=177,197,200,202
The TORSION action with label psi6 calculates the following quantities: Quantity | Description |
psi6.value | the TORSION involving these atoms |
psi7: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=202,220,223,225
The TORSION action with label psi7 calculates the following quantities: Quantity | Description |
psi7.value | the TORSION involving these atoms |
psi8: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=225,246,249,251
The TORSION action with label psi8 calculates the following quantities: Quantity | Description |
psi8.value | the TORSION involving these atoms |
psi9: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=251,275,278,280
The TORSION action with label psi9 calculates the following quantities: Quantity | Description |
psi9.value | the TORSION involving these atoms |
psi12: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=339,360,363,365
The TORSION action with label psi12 calculates the following quantities: Quantity | Description |
psi12.value | the TORSION involving these atoms |
psi13: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=365,393,396,398
The TORSION action with label psi13 calculates the following quantities: Quantity | Description |
psi13.value | the TORSION involving these atoms |
psi14: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=398,418,421,423
The TORSION action with label psi14 calculates the following quantities: Quantity | Description |
psi14.value | the TORSION involving these atoms |
psi15: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=423,451,454,456
The TORSION action with label psi15 calculates the following quantities: Quantity | Description |
psi15.value | the TORSION involving these atoms |
psi16: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=456,477,480,482
The TORSION action with label psi16 calculates the following quantities: Quantity | Description |
psi16.value | the TORSION involving these atoms |
psi17: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=482,506,509,511
The TORSION action with label psi17 calculates the following quantities: Quantity | Description |
psi17.value | the TORSION involving these atoms |
psi18: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=511,531,534,536
The TORSION action with label psi18 calculates the following quantities: Quantity | Description |
psi18.value | the TORSION involving these atoms |
psi19: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=536,554,557,559
The TORSION action with label psi19 calculates the following quantities: Quantity | Description |
psi19.value | the TORSION involving these atoms |
psi20: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=559,580,583,585
The TORSION action with label psi20 calculates the following quantities: Quantity | Description |
psi20.value | the TORSION involving these atoms |
psi21: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=585,609,612,614
The TORSION action with label psi21 calculates the following quantities: Quantity | Description |
psi21.value | the TORSION involving these atoms |
omega1: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=26,29,31,59
The TORSION action with label omega1 calculates the following quantities: Quantity | Description |
omega1.value | the TORSION involving these atoms |
omega2: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=59,62,64,84
The TORSION action with label omega2 calculates the following quantities: Quantity | Description |
omega2.value | the TORSION involving these atoms |
omega3: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=84,87,89,117
The TORSION action with label omega3 calculates the following quantities: Quantity | Description |
omega3.value | the TORSION involving these atoms |
omega4: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=117,120,122,143
The TORSION action with label omega4 calculates the following quantities: Quantity | Description |
omega4.value | the TORSION involving these atoms |
omega5: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=143,146,148,172
The TORSION action with label omega5 calculates the following quantities: Quantity | Description |
omega5.value | the TORSION involving these atoms |
omega6: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=172,175,177,197
The TORSION action with label omega6 calculates the following quantities: Quantity | Description |
omega6.value | the TORSION involving these atoms |
omega7: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=197,200,202,220
The TORSION action with label omega7 calculates the following quantities: Quantity | Description |
omega7.value | the TORSION involving these atoms |
omega8: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=220,223,225,246
The TORSION action with label omega8 calculates the following quantities: Quantity | Description |
omega8.value | the TORSION involving these atoms |
omega9: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=246,249,251,275
The TORSION action with label omega9 calculates the following quantities: Quantity | Description |
omega9.value | the TORSION involving these atoms |
omega10: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=275,278,280,300
The TORSION action with label omega10 calculates the following quantities: Quantity | Description |
omega10.value | the TORSION involving these atoms |
omega13: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=360,363,365,393
The TORSION action with label omega13 calculates the following quantities: Quantity | Description |
omega13.value | the TORSION involving these atoms |
omega14: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=393,396,398,418
The TORSION action with label omega14 calculates the following quantities: Quantity | Description |
omega14.value | the TORSION involving these atoms |
omega15: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=418,421,423,451
The TORSION action with label omega15 calculates the following quantities: Quantity | Description |
omega15.value | the TORSION involving these atoms |
omega16: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=451,454,456,477
The TORSION action with label omega16 calculates the following quantities: Quantity | Description |
omega16.value | the TORSION involving these atoms |
omega17: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=477,480,482,506
The TORSION action with label omega17 calculates the following quantities: Quantity | Description |
omega17.value | the TORSION involving these atoms |
omega18: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=506,509,511,531
The TORSION action with label omega18 calculates the following quantities: Quantity | Description |
omega18.value | the TORSION involving these atoms |
omega19: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=531,534,536,554
The TORSION action with label omega19 calculates the following quantities: Quantity | Description |
omega19.value | the TORSION involving these atoms |
omega20: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=554,557,559,580
The TORSION action with label omega20 calculates the following quantities: Quantity | Description |
omega20.value | the TORSION involving these atoms |
omega21: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=580,583,585,609
The TORSION action with label omega21 calculates the following quantities: Quantity | Description |
omega21.value | the TORSION involving these atoms |
omega22: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=609,612,614,629
The TORSION action with label omega22 calculates the following quantities: Quantity | Description |
omega22.value | the TORSION involving these atoms |
chi1: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=59,31,32,35
The TORSION action with label chi1 calculates the following quantities: Quantity | Description |
chi1.value | the TORSION involving these atoms |
chi2: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=84,64,65,71
The TORSION action with label chi2 calculates the following quantities: Quantity | Description |
chi2.value | the TORSION involving these atoms |
chi3: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=117,89,90,93
The TORSION action with label chi3 calculates the following quantities: Quantity | Description |
chi3.value | the TORSION involving these atoms |
chi4: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=143,122,123,129
The TORSION action with label chi4 calculates the following quantities: Quantity | Description |
chi4.value | the TORSION involving these atoms |
chi5: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=172,148,149,155
The TORSION action with label chi5 calculates the following quantities: Quantity | Description |
chi5.value | the TORSION involving these atoms |
chi6: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=197,177,178,184
The TORSION action with label chi6 calculates the following quantities: Quantity | Description |
chi6.value | the TORSION involving these atoms |
chi7: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=220,202,203,209
The TORSION action with label chi7 calculates the following quantities: Quantity | Description |
chi7.value | the TORSION involving these atoms |
chi8: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=246,225,226,232
The TORSION action with label chi8 calculates the following quantities: Quantity | Description |
chi8.value | the TORSION involving these atoms |
chi9: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=275,251,252,258
The TORSION action with label chi9 calculates the following quantities: Quantity | Description |
chi9.value | the TORSION involving these atoms |
chi10: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=300,280,281,287
The TORSION action with label chi10 calculates the following quantities: Quantity | Description |
chi10.value | the TORSION involving these atoms |
chi12: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=360,339,340,346
The TORSION action with label chi12 calculates the following quantities: Quantity | Description |
chi12.value | the TORSION involving these atoms |
chi13: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=393,365,366,369
The TORSION action with label chi13 calculates the following quantities: Quantity | Description |
chi13.value | the TORSION involving these atoms |
chi14: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=418,398,399,405
The TORSION action with label chi14 calculates the following quantities: Quantity | Description |
chi14.value | the TORSION involving these atoms |
chi15: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=451,423,424,427
The TORSION action with label chi15 calculates the following quantities: Quantity | Description |
chi15.value | the TORSION involving these atoms |
chi16: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=477,456,457,463
The TORSION action with label chi16 calculates the following quantities: Quantity | Description |
chi16.value | the TORSION involving these atoms |
chi17: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=506,482,483,489
The TORSION action with label chi17 calculates the following quantities: Quantity | Description |
chi17.value | the TORSION involving these atoms |
chi18: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=531,511,512,518
The TORSION action with label chi18 calculates the following quantities: Quantity | Description |
chi18.value | the TORSION involving these atoms |
chi19: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=554,536,537,543
The TORSION action with label chi19 calculates the following quantities: Quantity | Description |
chi19.value | the TORSION involving these atoms |
chi20: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=580,559,560,566
The TORSION action with label chi20 calculates the following quantities: Quantity | Description |
chi20.value | the TORSION involving these atoms |
chi21: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=609,585,586,592
The TORSION action with label chi21 calculates the following quantities: Quantity | Description |
chi21.value | the TORSION involving these atoms |
chia: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=31,32,35,37
The TORSION action with label chia calculates the following quantities: Quantity | Description |
chia.value | the TORSION involving these atoms |
chib: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=89,90,93,95
The TORSION action with label chib calculates the following quantities: Quantity | Description |
chib.value | the TORSION involving these atoms |
chic: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=148,149,155,157
The TORSION action with label chic calculates the following quantities: Quantity | Description |
chic.value | the TORSION involving these atoms |
chid: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=202,203,209,210
The TORSION action with label chid calculates the following quantities: Quantity | Description |
chid.value | the TORSION involving these atoms |
chie: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=251,252,258,260
The TORSION action with label chie calculates the following quantities: Quantity | Description |
chie.value | the TORSION involving these atoms |
chif: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=365,366,369,371
The TORSION action with label chif calculates the following quantities: Quantity | Description |
chif.value | the TORSION involving these atoms |
chig: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=423,424,427,429
The TORSION action with label chig calculates the following quantities: Quantity | Description |
chig.value | the TORSION involving these atoms |
chih: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=482,483,489,491
The TORSION action with label chih calculates the following quantities: Quantity | Description |
chih.value | the TORSION involving these atoms |
chii: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=536,537,543,544
The TORSION action with label chii calculates the following quantities: Quantity | Description |
chii.value | the TORSION involving these atoms |
chij: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=585,586,592,594
The TORSION action with label chij calculates the following quantities: Quantity | Description |
chij.value | the TORSION involving these atoms |
chiaa: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=32,35,37,38
The TORSION action with label chiaa calculates the following quantities: Quantity | Description |
chiaa.value | the TORSION involving these atoms |
chiba: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=90,93,95,96
The TORSION action with label chiba calculates the following quantities: Quantity | Description |
chiba.value | the TORSION involving these atoms |
chifa: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=366,369,371,372
The TORSION action with label chifa calculates the following quantities: Quantity | Description |
chifa.value | the TORSION involving these atoms |
chiga: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=424,427,429,430
# --- End of included input ---
The TORSION action with label chiga calculates the following quantities: Quantity | Description |
chiga.value | the TORSION involving these atoms |
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=* STRIDE the frequency with which the quantities of interest should be output=1000 FILEthe name of the file on which to output these quantities=COLVAR