Project ID: plumID:23.024
Stderr for source: examples/driverTests/plumed_Ar13.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above ../../src/pines/PINES.cpp: In constructor ‘PLMD::PINES::PINES::PINES(const PLMD::ActionOptions&)’: ../../src/pines/PINES.cpp:379:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 379 | if(rind==Presind[j]) { ../../src/pines/PINES.cpp:416:11: warning: unused variable ‘rind’ [-Wunused-variable] 416 | int rind=mypdb.getResidueNumber(anum); | ^~~~ ../../src/pines/PINES.cpp:1012:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<PLMD::VectorGeneric<3> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1012 | for (int i = 0; i < ann_deriv.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ ../../src/pines/PINES.cpp: In member function ‘virtual void PLMD::PINES::PINES::prepare()’: ../../src/pines/PINES.cpp:1090:11: warning: unused variable ‘buffer’ [-Wunused-variable] 1090 | int buffer=10; | ^~~~~~ ../../src/pines/PINES.cpp: In member function ‘virtual void PLMD::PINES::PINES::calculate()’: ../../src/pines/PINES.cpp:1512:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1512 | if(sb_count > max_solv_atoms) { | ~~~~~~~~~^~~~~~~~~~~~~~~~ ../../src/pines/PINES.cpp:1567:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1567 | if(nl_small[j]->size() >= max_solv_atoms) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ../../src/pines/PINES.cpp:1575:44: warning: comparison of integer expressions of different signedness: ‘std::vector ::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1575 | if(sb_count - A0[i].size() < max_solv_atoms) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../../src/pines/PINES.cpp:1656:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 1656 | for(unsigned m=0; m<OrdVecAll[i+l*Nprec]; m++) { ../../src/pines/PINES.cpp:1668:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 1668 | for(unsigned m=0; m<OrdVec[i]; m++) { ../../src/pines/PINES.cpp:1723:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1723 | if(limit > max_solv_atoms) { | ~~~~~~^~~~~~~~~~~~~~~~ ../../src/pines/PINES.cpp:1704:10: warning: unused variable ‘dosorting’ [-Wunused-variable] 1704 | bool dosorting=dosort[j]; | ^~~~~~~~~ ../../src/pines/PINES.cpp:1801:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1801 | if(limit > max_solv_atoms) { | ~~~~~~^~~~~~~~~~~~~~~~ ../../src/pines/PINES.cpp:1826:16: warning: unused variable ‘tPINES’ [-Wunused-variable] 1826 | double tPINES = sfs[j].calculate(dm*Fvol, dfunc); | ^~~~~~ ../../src/pines/PINES.cpp:1902:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1902 | if( (limit > max_solv_atoms) && (solv_blocks != 0) ){ | ~~~~~~^~~~~~~~~~~~~~~~ ../../src/pines/PINES.cpp:1771:8: warning: unused variable ‘Nder’ [-Wunused-variable] 1771 | bool Nder=CompDer; | ^~~~ ../../src/pines/PINES.cpp:1772:8: warning: unused variable ‘Scalevol’ [-Wunused-variable] 1772 | bool Scalevol=Svol; | ^~~~~~~~ ../../src/pines/PINES.cpp: In constructor ‘PLMD::PINES::PINES::PINES(const PLMD::ActionOptions&)’: ../../src/pines/PINES.cpp:465:46: warning: ‘oind’ may be used uninitialized in this function [-Wmaybe-uninitialized] 465 | gname=mypdb.getAtomName(comatm[Pind0[oind]-1][0]); | ^ ../../src/pines/PINES.cpp: In constructor ‘PLMD::PINES::PINES::PINES(const PLMD::ActionOptions&)’: ../../src/pines/PINES.cpp:465:46: warning: ‘oind’ may be used uninitialized in this function [-Wmaybe-uninitialized] 465 | gname=mypdb.getAtomName(comatm[Pind0[oind]-1][0]); | ^ ../../src/annbfunc/ANNB.cpp:487:94: warning: backslash and newline separated by space 487 | derivatives_of_each_layer[jj + 1][kk] += derivatives_of_each_layer[jj + 1][kk] \ | ../../src/annbfunc/ANNB.cpp: In constructor ‘PLMD::function::annfunc::ANNB::ANNB(const PLMD::ActionOptions&)’: ../../src/annbfunc/ANNB.cpp:221:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 221 | if(getNumberOfArguments() != num_nodes[0]) { ../../src/annbfunc/ANNB.cpp:236:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector ::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 236 | for (int jj = 0; jj < temp_coeff[ii].size(); jj ++) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~ ../../src/annbfunc/ANNB.cpp: In member function ‘void PLMD::function::annfunc::ANNB::calculate_output_of_each_layer(const std::vector &)’: ../../src/annbfunc/ANNB.cpp:324:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector ::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 324 | for(int ii = 1; ii < num_nodes.size(); ii ++) { | ~~~^~~~~~~~~~~~~~~~~~ </pre>