Project ID: plumID:22.036
Stderr for source: plumed.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">> WARNING: "core/Atoms.h" does not exist anymore in version >=2.10, you should change your code. In file included from /home/runner/opt/include/plumed_master/colvar/../core/../tools/Tools.h:27, from /home/runner/opt/include/plumed_master/colvar/../core/Action.h:28, from /home/runner/opt/include/plumed_master/colvar/../core/ActionAtomistic.h:25, from /home/runner/opt/include/plumed_master/colvar/../core/Colvar.h:25, from /home/runner/opt/include/plumed_master/colvar/Colvar.h:24, from /home/runner/opt/include/plumed_master/colvar/CoordinationBase.h:24, from ./GHBFIX.KVbk7q.cpp:22: /home/runner/opt/include/plumed_master/colvar/../core/../tools/Tensor.h:98: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 98 | #pragma acc enter data copyin(this[0:1], d, d[0:n*m-1]) | /home/runner/opt/include/plumed_master/colvar/../core/../tools/Tensor.h:102: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 102 | #pragma acc exit data delete( d[0:n*m-1], d, this[0:1]) | In file included from /home/runner/opt/include/plumed_master/colvar/../core/ActionAtomistic.h:27: /home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:94: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas] 94 | #pragma acc routine seq | /home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:100: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas] 100 | #pragma acc routine seq | /home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:102: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas] 102 | #pragma acc routine seq | /home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:108: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas] 108 | #pragma acc routine seq | /home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:112: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas] 112 | #pragma acc routine seq | /home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:116: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas] 116 | #pragma acc routine seq | /home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:120: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas] 120 | #pragma acc routine seq | /home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:123: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas] 123 | #pragma acc routine seq | In file included from /home/runner/opt/include/plumed_master/colvar/../core/Colvar.h:27: /home/runner/opt/include/plumed_master/colvar/../core/../tools/Matrix.h:100: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 100 | #pragma acc enter data copyin(this[0:1],sz,data[0:sz]) | /home/runner/opt/include/plumed_master/colvar/../core/../tools/Matrix.h:103: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 103 | #pragma acc exit data delete(data[0:sz],sz,this[0:1]) | /home/runner/opt/include/plumed_master/colvar/../core/../tools/Matrix.h:117: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 117 | #pragma acc enter data copyin(this[0:1]) | /home/runner/opt/include/plumed_master/colvar/../core/../tools/Matrix.h:123: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 123 | #pragma acc exit data delete( this[0:1]) | In file included from ./GHBFIX.KVbk7q.cpp:23: /home/runner/opt/include/plumed_master/tools/SwitchingFunction.h:182: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas] 182 | #pragma acc routine seq | /home/runner/opt/include/plumed_master/tools/SwitchingFunction.h:190: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas] 190 | #pragma acc routine seq | In file included from /home/runner/opt/include/plumed_master/colvar/../core/../tools/Keywords.h:30, from /home/runner/opt/include/plumed_master/colvar/../core/Action.h:27: ./GHBFIX.KVbk7q.cpp: In constructor ‘PLMD::colvar::GHBFIX::GHBFIX(const PLMD::ActionOptions&)’: ./GHBFIX.KVbk7q.cpp:139:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 139 | plumed_assert(it<n)<<"itype ="<<it<<", should be smaller than "<<n; | ~~^~ /home/runner/opt/include/plumed_master/colvar/../core/../tools/Exception.h:376:34: note: in definition of macro ‘plumed_assert’ 376 | #define plumed_assert(test) if(!(test)) plumed_error() << PLMD::Exception::Assertion(#test) | ^~~~ ./GHBFIX.KVbk7q.cpp:140:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 140 | plumed_assert(jt<n)<<"jtype ="<<jt<<", should be smaller than "<<n; | ~~^~ /home/runner/opt/include/plumed_master/colvar/../core/../tools/Exception.h:376:34: note: in definition of macro ‘plumed_assert’ 376 | #define plumed_assert(test) if(!(test)) plumed_error() << PLMD::Exception::Assertion(#test) | ^~~~ terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (core/Action.cpp:373) void PLMD::Action::error(const std::string&) const ERROR in input to action METAD with label metad : The GRID file you want to read: GRID, cannot be found! [pkrvmbietmlfzoi:08067] *** Process received signal *** [pkrvmbietmlfzoi:08067] Signal: Aborted (6) [pkrvmbietmlfzoi:08067] Signal code: (-6) [pkrvmbietmlfzoi:08067] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f0bb0845330] [pkrvmbietmlfzoi:08067] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f0bb089eb2c] [pkrvmbietmlfzoi:08067] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f0bb084527e] [pkrvmbietmlfzoi:08067] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f0bb08288ff] [pkrvmbietmlfzoi:08067] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5ff5)[0x7f0bb0ca5ff5] [pkrvmbietmlfzoi:08067] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xbb0da)[0x7f0bb0cbb0da] [pkrvmbietmlfzoi:08067] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt10unexpectedv+0x0)[0x7f0bb0ca5a55] [pkrvmbietmlfzoi:08067] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5a6f)[0x7f0bb0ca5a6f] [pkrvmbietmlfzoi:08067] [ 8] plumed_master(+0x146dd)[0x55ee3612c6dd] [pkrvmbietmlfzoi:08067] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f0bb082a1ca] [pkrvmbietmlfzoi:08067] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f0bb082a28b] [pkrvmbietmlfzoi:08067] [11] plumed_master(+0x15365)[0x55ee3612d365] [pkrvmbietmlfzoi:08067] *** End of error message ***