Project ID: plumID:22.036
Stderr for source: plumed.dat
Download: zipped raw stdout - zipped raw stderr

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WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">>
WARNING: "core/Atoms.h" does not exist anymore in  version >=2.10, you should change your code.
In file included from /home/runner/opt/include/plumed_master/colvar/../core/../tools/Tools.h:27,
from /home/runner/opt/include/plumed_master/colvar/../core/Action.h:28,
from /home/runner/opt/include/plumed_master/colvar/../core/ActionAtomistic.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Colvar.h:25,
from /home/runner/opt/include/plumed_master/colvar/Colvar.h:24,
from /home/runner/opt/include/plumed_master/colvar/CoordinationBase.h:24,
from ./GHBFIX.KVbk7q.cpp:22:
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Tensor.h:98: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas]
98 | #pragma acc enter data copyin(this[0:1], d, d[0:n*m-1])
|
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Tensor.h:102: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas]
102 | #pragma acc exit data delete( d[0:n*m-1], d, this[0:1])
|
In file included from /home/runner/opt/include/plumed_master/colvar/../core/ActionAtomistic.h:27:
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:94: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas]
94 | #pragma acc routine seq
|
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:100: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas]
100 | #pragma acc routine seq
|
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:102: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas]
102 | #pragma acc routine seq
|
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:108: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas]
108 | #pragma acc routine seq
|
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:112: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas]
112 | #pragma acc routine seq
|
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:116: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas]
116 | #pragma acc routine seq
|
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:120: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas]
120 | #pragma acc routine seq
|
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Pbc.h:123: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas]
123 | #pragma acc routine seq
|
In file included from /home/runner/opt/include/plumed_master/colvar/../core/Colvar.h:27:
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Matrix.h:100: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas]
100 | #pragma acc enter data copyin(this[0:1],sz,data[0:sz])
|
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Matrix.h:103: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas]
103 | #pragma acc exit data delete(data[0:sz],sz,this[0:1])
|
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Matrix.h:117: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas]
117 | #pragma acc enter data copyin(this[0:1])
|
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Matrix.h:123: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas]
123 | #pragma acc exit data delete( this[0:1])
|
In file included from ./GHBFIX.KVbk7q.cpp:23:
/home/runner/opt/include/plumed_master/tools/SwitchingFunction.h:182: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas]
182 | #pragma acc routine seq
|
/home/runner/opt/include/plumed_master/tools/SwitchingFunction.h:190: warning: ignoring ‘#pragma acc routine’ [-Wunknown-pragmas]
190 | #pragma acc routine seq
|
In file included from /home/runner/opt/include/plumed_master/colvar/../core/../tools/Keywords.h:30,
from /home/runner/opt/include/plumed_master/colvar/../core/Action.h:27:
./GHBFIX.KVbk7q.cpp: In constructor ‘PLMD::colvar::GHBFIX::GHBFIX(const PLMD::ActionOptions&)’:
./GHBFIX.KVbk7q.cpp:139:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
139 |       plumed_assert(it<n)<<"itype ="<<it<<", should be smaller than "<<n;
|                     ~~^~
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Exception.h:376:34: note: in definition of macro ‘plumed_assert’
376 | #define plumed_assert(test) if(!(test)) plumed_error() << PLMD::Exception::Assertion(#test)
|                                  ^~~~
./GHBFIX.KVbk7q.cpp:140:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
140 |       plumed_assert(jt<n)<<"jtype ="<<jt<<", should be smaller than "<<n;
|                     ~~^~
/home/runner/opt/include/plumed_master/colvar/../core/../tools/Exception.h:376:34: note: in definition of macro ‘plumed_assert’
376 | #define plumed_assert(test) if(!(test)) plumed_error() << PLMD::Exception::Assertion(#test)
|                                  ^~~~
terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError'
what():
(core/Action.cpp:373) void PLMD::Action::error(const std::string&) const
ERROR in input to action METAD with label metad : The GRID file you want to read: GRID, cannot be found!
[pkrvmbietmlfzoi:08067] *** Process received signal ***
[pkrvmbietmlfzoi:08067] Signal: Aborted (6)
[pkrvmbietmlfzoi:08067] Signal code:  (-6)
[pkrvmbietmlfzoi:08067] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f0bb0845330]
[pkrvmbietmlfzoi:08067] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f0bb089eb2c]
[pkrvmbietmlfzoi:08067] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f0bb084527e]
[pkrvmbietmlfzoi:08067] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f0bb08288ff]
[pkrvmbietmlfzoi:08067] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5ff5)[0x7f0bb0ca5ff5]
[pkrvmbietmlfzoi:08067] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xbb0da)[0x7f0bb0cbb0da]
[pkrvmbietmlfzoi:08067] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt10unexpectedv+0x0)[0x7f0bb0ca5a55]
[pkrvmbietmlfzoi:08067] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5a6f)[0x7f0bb0ca5a6f]
[pkrvmbietmlfzoi:08067] [ 8] plumed_master(+0x146dd)[0x55ee3612c6dd]
[pkrvmbietmlfzoi:08067] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f0bb082a1ca]
[pkrvmbietmlfzoi:08067] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f0bb082a28b]
[pkrvmbietmlfzoi:08067] [11] plumed_master(+0x15365)[0x55ee3612d365]
[pkrvmbietmlfzoi:08067] *** End of error message ***