Project ID: plumID:22.036
Stderr for source: plumed.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above In file included from /home/runner/opt/include/plumed/colvar/../core/../tools/Keywords.h:29, from /home/runner/opt/include/plumed/colvar/../core/Action.h:27, from /home/runner/opt/include/plumed/colvar/../core/ActionAtomistic.h:25, from /home/runner/opt/include/plumed/colvar/../core/Colvar.h:25, from /home/runner/opt/include/plumed/colvar/Colvar.h:24, from /home/runner/opt/include/plumed/colvar/CoordinationBase.h:24, from ./GHBFIX.cpp:22: ./GHBFIX.cpp: In constructor ‘PLMD::colvar::GHBFIX::GHBFIX(const PLMD::ActionOptions&)’: ./GHBFIX.cpp:140:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 140 | plumed_assert(it<n)<<"itype ="<<it<<", should be smaller than "<<n; | ~~^~ /home/runner/opt/include/plumed/colvar/../core/../tools/Exception.h:373:34: note: in definition of macro ‘plumed_assert’ 373 | #define plumed_assert(test) if(!(test)) plumed_error() << PLMD::Exception::Assertion(#test) | ^~~~ ./GHBFIX.cpp:141:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 141 | plumed_assert(jt<n)<<"jtype ="<<jt<<", should be smaller than "<<n; | ~~^~ /home/runner/opt/include/plumed/colvar/../core/../tools/Exception.h:373:34: note: in definition of macro ‘plumed_assert’ 373 | #define plumed_assert(test) if(!(test)) plumed_error() << PLMD::Exception::Assertion(#test) | ^~~~ terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (core/PlumedMain.cpp:823) void PLMD::PlumedMain::readInputWords(const std::vector<std::__cxx11::basic_string>&) ERROR I cannot understand line: GHBFIX LABEL=group_1 PAIR GROUPA=20,18,494,492,1036,1034,1503,1505,1508,240,242,244,274,272,1252,1254,1257,1288,1286 GROUPB=1007,1005,1540,1538,2017,2015,523,525,527,779,781,784,1760,1758,1790,1792,1794,752,750 D_0=0.23 D_MAX=0.33 C=0.8 TYPES=typesTable.dat PARAMS=scalingParameters.dat Maybe a missing space or a typo? [fv-az436-226:04901] *** Process received signal *** [fv-az436-226:04901] Signal: Aborted (6) [fv-az436-226:04901] Signal code: (-6) [fv-az436-226:04901] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f9efb48f520] [fv-az436-226:04901] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f9efb4e3a7c] [fv-az436-226:04901] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f9efb48f476] [fv-az436-226:04901] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f9efb4757f3] [fv-az436-226:04901] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa2bbe)[0x7f9efb739bbe] [fv-az436-226:04901] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae24c)[0x7f9efb74524c] [fv-az436-226:04901] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae2b7)[0x7f9efb7452b7] [fv-az436-226:04901] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f9efb74556b] [fv-az436-226:04901] [ 8] plumed(+0x12f48)[0x55b717e98f48] [fv-az436-226:04901] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f9efb476d90] [fv-az436-226:04901] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f9efb476e40] [fv-az436-226:04901] [11] plumed(+0x131e5)[0x55b717e991e5] [fv-az436-226:04901] *** End of error message *** </pre>