Project ID: plumID:22.011
Source: Aib9_structural_round_1.dat
Originally used with PLUMED version: 2.6.2
Stable: zipped raw stdout - zipped raw stderr - stderr
Master: zipped raw stdout - zipped raw stderr - stderr
Click on the labels of the actions for more information on what each action computes
MOLINFOThis command is used to provide information on the molecules that are present in your system. More details STRUCTUREa file in pdb format containing a reference structure=step3_input.pdb MOLTYPE what kind of molecule is contained in the pdb file - usually not needed since protein/RNA/DNA are compatible=protein
The MOLINFO action with label calculates somethingphi_1The TORSION action with label phi_1 calculates the following quantities: Quantity | Type | Description |
phi_1 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=5,7,9,18
psi_1The TORSION action with label psi_1 calculates the following quantities: Quantity | Type | Description |
psi_1 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=7,9,18,20
phi_2The TORSION action with label phi_2 calculates the following quantities: Quantity | Type | Description |
phi_2 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=18,20,22,31
psi_2The TORSION action with label psi_2 calculates the following quantities: Quantity | Type | Description |
psi_2 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=20,22,31,33
phi_3The TORSION action with label phi_3 calculates the following quantities: Quantity | Type | Description |
phi_3 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=31,33,35,44
psi_3The TORSION action with label psi_3 calculates the following quantities: Quantity | Type | Description |
psi_3 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=33,35,44,46
phi_4The TORSION action with label phi_4 calculates the following quantities: Quantity | Type | Description |
phi_4 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=44,46,48,57
psi_4The TORSION action with label psi_4 calculates the following quantities: Quantity | Type | Description |
psi_4 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=46,48,57,59
phi_5The TORSION action with label phi_5 calculates the following quantities: Quantity | Type | Description |
phi_5 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=57,59,61,70
psi_5The TORSION action with label psi_5 calculates the following quantities: Quantity | Type | Description |
psi_5 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=59,61,70,72
phi_6The TORSION action with label phi_6 calculates the following quantities: Quantity | Type | Description |
phi_6 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=70,72,74,83
psi_6The TORSION action with label psi_6 calculates the following quantities: Quantity | Type | Description |
psi_6 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=72,74,83,85
phi_7The TORSION action with label phi_7 calculates the following quantities: Quantity | Type | Description |
phi_7 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=83,85,87,96
psi_7The TORSION action with label psi_7 calculates the following quantities: Quantity | Type | Description |
psi_7 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=85,87,96,98
phi_8The TORSION action with label phi_8 calculates the following quantities: Quantity | Type | Description |
phi_8 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=96,98,100,109
psi_8The TORSION action with label psi_8 calculates the following quantities: Quantity | Type | Description |
psi_8 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=98,100,109,111
phi_9The TORSION action with label phi_9 calculates the following quantities: Quantity | Type | Description |
phi_9 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=109,111,113,122
psi_9The TORSION action with label psi_9 calculates the following quantities: Quantity | Type | Description |
psi_9 | scalar | the TORSION involving these atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMSthe four atoms involved in the torsional angle=111,113,122,124
ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=5,7,9,18 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_phi_1The ALPHABETA action with label ab_cos_phi_1 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_1 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=5,7,9,18 REFERENCE=0 LABEL=ab_cos_phi_1
ab_cos_phi_1_torsionsThe TORSION action with label ab_cos_phi_1_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_1_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=5,7,9,18
ab_cos_phi_1_refThe CONSTANT action with label ab_cos_phi_1_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_1_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_phi_1_coeffThe CONSTANT action with label ab_cos_phi_1_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_1_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_phi_1_combThe COMBINE action with label ab_cos_phi_1_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_1_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_phi_1_torsions,ab_cos_phi_1_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_1_cosThe CUSTOM action with label ab_cos_phi_1_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_1_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_phi_1_comb,ab_cos_phi_1_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_1The SUM action with label ab_cos_phi_1 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_1 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_phi_1_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=5,7,9,18 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_phi_1The ALPHABETA action with label ab_sin_phi_1 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_1 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=5,7,9,18 REFERENCE=-1.5708 LABEL=ab_sin_phi_1
ab_sin_phi_1_torsionsThe TORSION action with label ab_sin_phi_1_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_1_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=5,7,9,18
ab_sin_phi_1_refThe CONSTANT action with label ab_sin_phi_1_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_1_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_phi_1_coeffThe CONSTANT action with label ab_sin_phi_1_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_1_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_phi_1_combThe COMBINE action with label ab_sin_phi_1_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_1_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_phi_1_torsions,ab_sin_phi_1_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_1_cosThe CUSTOM action with label ab_sin_phi_1_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_1_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_phi_1_comb,ab_sin_phi_1_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_1The SUM action with label ab_sin_phi_1 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_1 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_phi_1_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=7,9,18,20 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_psi_1The ALPHABETA action with label ab_cos_psi_1 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_1 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=7,9,18,20 REFERENCE=0 LABEL=ab_cos_psi_1
ab_cos_psi_1_torsionsThe TORSION action with label ab_cos_psi_1_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_1_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=7,9,18,20
ab_cos_psi_1_refThe CONSTANT action with label ab_cos_psi_1_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_1_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_psi_1_coeffThe CONSTANT action with label ab_cos_psi_1_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_1_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_psi_1_combThe COMBINE action with label ab_cos_psi_1_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_1_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_psi_1_torsions,ab_cos_psi_1_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_1_cosThe CUSTOM action with label ab_cos_psi_1_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_1_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_psi_1_comb,ab_cos_psi_1_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_1The SUM action with label ab_cos_psi_1 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_1 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_psi_1_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=7,9,18,20 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_psi_1The ALPHABETA action with label ab_sin_psi_1 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_1 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=7,9,18,20 REFERENCE=-1.5708 LABEL=ab_sin_psi_1
ab_sin_psi_1_torsionsThe TORSION action with label ab_sin_psi_1_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_1_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=7,9,18,20
ab_sin_psi_1_refThe CONSTANT action with label ab_sin_psi_1_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_1_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_psi_1_coeffThe CONSTANT action with label ab_sin_psi_1_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_1_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_psi_1_combThe COMBINE action with label ab_sin_psi_1_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_1_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_psi_1_torsions,ab_sin_psi_1_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_1_cosThe CUSTOM action with label ab_sin_psi_1_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_1_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_psi_1_comb,ab_sin_psi_1_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_1The SUM action with label ab_sin_psi_1 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_1 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_psi_1_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=18,20,22,31 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_phi_2The ALPHABETA action with label ab_cos_phi_2 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_2 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=18,20,22,31 REFERENCE=0 LABEL=ab_cos_phi_2
ab_cos_phi_2_torsionsThe TORSION action with label ab_cos_phi_2_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_2_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=18,20,22,31
ab_cos_phi_2_refThe CONSTANT action with label ab_cos_phi_2_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_2_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_phi_2_coeffThe CONSTANT action with label ab_cos_phi_2_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_2_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_phi_2_combThe COMBINE action with label ab_cos_phi_2_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_2_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_phi_2_torsions,ab_cos_phi_2_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_2_cosThe CUSTOM action with label ab_cos_phi_2_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_2_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_phi_2_comb,ab_cos_phi_2_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_2The SUM action with label ab_cos_phi_2 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_2 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_phi_2_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=18,20,22,31 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_phi_2The ALPHABETA action with label ab_sin_phi_2 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_2 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=18,20,22,31 REFERENCE=-1.5708 LABEL=ab_sin_phi_2
ab_sin_phi_2_torsionsThe TORSION action with label ab_sin_phi_2_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_2_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=18,20,22,31
ab_sin_phi_2_refThe CONSTANT action with label ab_sin_phi_2_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_2_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_phi_2_coeffThe CONSTANT action with label ab_sin_phi_2_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_2_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_phi_2_combThe COMBINE action with label ab_sin_phi_2_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_2_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_phi_2_torsions,ab_sin_phi_2_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_2_cosThe CUSTOM action with label ab_sin_phi_2_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_2_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_phi_2_comb,ab_sin_phi_2_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_2The SUM action with label ab_sin_phi_2 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_2 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_phi_2_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=20,22,31,33 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_psi_2The ALPHABETA action with label ab_cos_psi_2 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_2 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=20,22,31,33 REFERENCE=0 LABEL=ab_cos_psi_2
ab_cos_psi_2_torsionsThe TORSION action with label ab_cos_psi_2_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_2_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=20,22,31,33
ab_cos_psi_2_refThe CONSTANT action with label ab_cos_psi_2_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_2_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_psi_2_coeffThe CONSTANT action with label ab_cos_psi_2_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_2_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_psi_2_combThe COMBINE action with label ab_cos_psi_2_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_2_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_psi_2_torsions,ab_cos_psi_2_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_2_cosThe CUSTOM action with label ab_cos_psi_2_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_2_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_psi_2_comb,ab_cos_psi_2_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_2The SUM action with label ab_cos_psi_2 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_2 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_psi_2_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=20,22,31,33 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_psi_2The ALPHABETA action with label ab_sin_psi_2 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_2 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=20,22,31,33 REFERENCE=-1.5708 LABEL=ab_sin_psi_2
ab_sin_psi_2_torsionsThe TORSION action with label ab_sin_psi_2_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_2_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=20,22,31,33
ab_sin_psi_2_refThe CONSTANT action with label ab_sin_psi_2_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_2_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_psi_2_coeffThe CONSTANT action with label ab_sin_psi_2_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_2_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_psi_2_combThe COMBINE action with label ab_sin_psi_2_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_2_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_psi_2_torsions,ab_sin_psi_2_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_2_cosThe CUSTOM action with label ab_sin_psi_2_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_2_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_psi_2_comb,ab_sin_psi_2_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_2The SUM action with label ab_sin_psi_2 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_2 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_psi_2_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=31,33,35,44 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_phi_3The ALPHABETA action with label ab_cos_phi_3 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_3 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=31,33,35,44 REFERENCE=0 LABEL=ab_cos_phi_3
ab_cos_phi_3_torsionsThe TORSION action with label ab_cos_phi_3_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_3_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=31,33,35,44
ab_cos_phi_3_refThe CONSTANT action with label ab_cos_phi_3_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_3_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_phi_3_coeffThe CONSTANT action with label ab_cos_phi_3_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_3_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_phi_3_combThe COMBINE action with label ab_cos_phi_3_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_3_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_phi_3_torsions,ab_cos_phi_3_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_3_cosThe CUSTOM action with label ab_cos_phi_3_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_3_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_phi_3_comb,ab_cos_phi_3_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_3The SUM action with label ab_cos_phi_3 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_3 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_phi_3_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=31,33,35,44 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_phi_3The ALPHABETA action with label ab_sin_phi_3 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_3 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=31,33,35,44 REFERENCE=-1.5708 LABEL=ab_sin_phi_3
ab_sin_phi_3_torsionsThe TORSION action with label ab_sin_phi_3_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_3_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=31,33,35,44
ab_sin_phi_3_refThe CONSTANT action with label ab_sin_phi_3_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_3_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_phi_3_coeffThe CONSTANT action with label ab_sin_phi_3_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_3_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_phi_3_combThe COMBINE action with label ab_sin_phi_3_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_3_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_phi_3_torsions,ab_sin_phi_3_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_3_cosThe CUSTOM action with label ab_sin_phi_3_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_3_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_phi_3_comb,ab_sin_phi_3_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_3The SUM action with label ab_sin_phi_3 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_3 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_phi_3_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=33,35,44,46 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_psi_3The ALPHABETA action with label ab_cos_psi_3 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_3 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=33,35,44,46 REFERENCE=0 LABEL=ab_cos_psi_3
ab_cos_psi_3_torsionsThe TORSION action with label ab_cos_psi_3_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_3_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=33,35,44,46
ab_cos_psi_3_refThe CONSTANT action with label ab_cos_psi_3_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_3_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_psi_3_coeffThe CONSTANT action with label ab_cos_psi_3_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_3_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_psi_3_combThe COMBINE action with label ab_cos_psi_3_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_3_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_psi_3_torsions,ab_cos_psi_3_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_3_cosThe CUSTOM action with label ab_cos_psi_3_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_3_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_psi_3_comb,ab_cos_psi_3_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_3The SUM action with label ab_cos_psi_3 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_3 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_psi_3_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=33,35,44,46 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_psi_3The ALPHABETA action with label ab_sin_psi_3 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_3 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=33,35,44,46 REFERENCE=-1.5708 LABEL=ab_sin_psi_3
ab_sin_psi_3_torsionsThe TORSION action with label ab_sin_psi_3_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_3_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=33,35,44,46
ab_sin_psi_3_refThe CONSTANT action with label ab_sin_psi_3_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_3_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_psi_3_coeffThe CONSTANT action with label ab_sin_psi_3_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_3_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_psi_3_combThe COMBINE action with label ab_sin_psi_3_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_3_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_psi_3_torsions,ab_sin_psi_3_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_3_cosThe CUSTOM action with label ab_sin_psi_3_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_3_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_psi_3_comb,ab_sin_psi_3_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_3The SUM action with label ab_sin_psi_3 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_3 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_psi_3_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=44,46,48,57 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_phi_4The ALPHABETA action with label ab_cos_phi_4 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_4 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=44,46,48,57 REFERENCE=0 LABEL=ab_cos_phi_4
ab_cos_phi_4_torsionsThe TORSION action with label ab_cos_phi_4_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_4_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=44,46,48,57
ab_cos_phi_4_refThe CONSTANT action with label ab_cos_phi_4_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_4_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_phi_4_coeffThe CONSTANT action with label ab_cos_phi_4_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_4_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_phi_4_combThe COMBINE action with label ab_cos_phi_4_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_4_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_phi_4_torsions,ab_cos_phi_4_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_4_cosThe CUSTOM action with label ab_cos_phi_4_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_4_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_phi_4_comb,ab_cos_phi_4_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_4The SUM action with label ab_cos_phi_4 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_4 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_phi_4_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=44,46,48,57 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_phi_4The ALPHABETA action with label ab_sin_phi_4 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_4 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=44,46,48,57 REFERENCE=-1.5708 LABEL=ab_sin_phi_4
ab_sin_phi_4_torsionsThe TORSION action with label ab_sin_phi_4_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_4_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=44,46,48,57
ab_sin_phi_4_refThe CONSTANT action with label ab_sin_phi_4_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_4_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_phi_4_coeffThe CONSTANT action with label ab_sin_phi_4_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_4_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_phi_4_combThe COMBINE action with label ab_sin_phi_4_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_4_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_phi_4_torsions,ab_sin_phi_4_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_4_cosThe CUSTOM action with label ab_sin_phi_4_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_4_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_phi_4_comb,ab_sin_phi_4_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_4The SUM action with label ab_sin_phi_4 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_4 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_phi_4_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=46,48,57,59 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_psi_4The ALPHABETA action with label ab_cos_psi_4 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_4 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=46,48,57,59 REFERENCE=0 LABEL=ab_cos_psi_4
ab_cos_psi_4_torsionsThe TORSION action with label ab_cos_psi_4_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_4_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=46,48,57,59
ab_cos_psi_4_refThe CONSTANT action with label ab_cos_psi_4_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_4_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_psi_4_coeffThe CONSTANT action with label ab_cos_psi_4_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_4_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_psi_4_combThe COMBINE action with label ab_cos_psi_4_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_4_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_psi_4_torsions,ab_cos_psi_4_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_4_cosThe CUSTOM action with label ab_cos_psi_4_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_4_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_psi_4_comb,ab_cos_psi_4_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_4The SUM action with label ab_cos_psi_4 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_4 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_psi_4_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=46,48,57,59 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_psi_4The ALPHABETA action with label ab_sin_psi_4 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_4 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=46,48,57,59 REFERENCE=-1.5708 LABEL=ab_sin_psi_4
ab_sin_psi_4_torsionsThe TORSION action with label ab_sin_psi_4_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_4_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=46,48,57,59
ab_sin_psi_4_refThe CONSTANT action with label ab_sin_psi_4_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_4_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_psi_4_coeffThe CONSTANT action with label ab_sin_psi_4_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_4_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_psi_4_combThe COMBINE action with label ab_sin_psi_4_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_4_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_psi_4_torsions,ab_sin_psi_4_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_4_cosThe CUSTOM action with label ab_sin_psi_4_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_4_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_psi_4_comb,ab_sin_psi_4_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_4The SUM action with label ab_sin_psi_4 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_4 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_psi_4_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=57,59,61,70 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_phi_5The ALPHABETA action with label ab_cos_phi_5 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_5 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=57,59,61,70 REFERENCE=0 LABEL=ab_cos_phi_5
ab_cos_phi_5_torsionsThe TORSION action with label ab_cos_phi_5_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_5_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=57,59,61,70
ab_cos_phi_5_refThe CONSTANT action with label ab_cos_phi_5_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_5_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_phi_5_coeffThe CONSTANT action with label ab_cos_phi_5_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_5_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_phi_5_combThe COMBINE action with label ab_cos_phi_5_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_5_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_phi_5_torsions,ab_cos_phi_5_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_5_cosThe CUSTOM action with label ab_cos_phi_5_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_5_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_phi_5_comb,ab_cos_phi_5_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_5The SUM action with label ab_cos_phi_5 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_5 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_phi_5_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=57,59,61,70 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_phi_5The ALPHABETA action with label ab_sin_phi_5 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_5 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=57,59,61,70 REFERENCE=-1.5708 LABEL=ab_sin_phi_5
ab_sin_phi_5_torsionsThe TORSION action with label ab_sin_phi_5_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_5_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=57,59,61,70
ab_sin_phi_5_refThe CONSTANT action with label ab_sin_phi_5_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_5_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_phi_5_coeffThe CONSTANT action with label ab_sin_phi_5_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_5_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_phi_5_combThe COMBINE action with label ab_sin_phi_5_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_5_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_phi_5_torsions,ab_sin_phi_5_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_5_cosThe CUSTOM action with label ab_sin_phi_5_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_5_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_phi_5_comb,ab_sin_phi_5_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_5The SUM action with label ab_sin_phi_5 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_5 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_phi_5_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=59,61,70,72 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_psi_5The ALPHABETA action with label ab_cos_psi_5 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_5 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=59,61,70,72 REFERENCE=0 LABEL=ab_cos_psi_5
ab_cos_psi_5_torsionsThe TORSION action with label ab_cos_psi_5_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_5_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=59,61,70,72
ab_cos_psi_5_refThe CONSTANT action with label ab_cos_psi_5_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_5_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_psi_5_coeffThe CONSTANT action with label ab_cos_psi_5_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_5_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_psi_5_combThe COMBINE action with label ab_cos_psi_5_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_5_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_psi_5_torsions,ab_cos_psi_5_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_5_cosThe CUSTOM action with label ab_cos_psi_5_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_5_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_psi_5_comb,ab_cos_psi_5_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_5The SUM action with label ab_cos_psi_5 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_5 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_psi_5_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=59,61,70,72 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_psi_5The ALPHABETA action with label ab_sin_psi_5 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_5 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=59,61,70,72 REFERENCE=-1.5708 LABEL=ab_sin_psi_5
ab_sin_psi_5_torsionsThe TORSION action with label ab_sin_psi_5_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_5_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=59,61,70,72
ab_sin_psi_5_refThe CONSTANT action with label ab_sin_psi_5_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_5_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_psi_5_coeffThe CONSTANT action with label ab_sin_psi_5_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_5_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_psi_5_combThe COMBINE action with label ab_sin_psi_5_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_5_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_psi_5_torsions,ab_sin_psi_5_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_5_cosThe CUSTOM action with label ab_sin_psi_5_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_5_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_psi_5_comb,ab_sin_psi_5_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_5The SUM action with label ab_sin_psi_5 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_5 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_psi_5_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=70,72,74,83 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_phi_6The ALPHABETA action with label ab_cos_phi_6 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_6 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=70,72,74,83 REFERENCE=0 LABEL=ab_cos_phi_6
ab_cos_phi_6_torsionsThe TORSION action with label ab_cos_phi_6_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_6_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=70,72,74,83
ab_cos_phi_6_refThe CONSTANT action with label ab_cos_phi_6_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_6_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_phi_6_coeffThe CONSTANT action with label ab_cos_phi_6_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_6_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_phi_6_combThe COMBINE action with label ab_cos_phi_6_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_6_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_phi_6_torsions,ab_cos_phi_6_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_6_cosThe CUSTOM action with label ab_cos_phi_6_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_6_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_phi_6_comb,ab_cos_phi_6_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_6The SUM action with label ab_cos_phi_6 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_6 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_phi_6_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=70,72,74,83 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_phi_6The ALPHABETA action with label ab_sin_phi_6 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_6 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=70,72,74,83 REFERENCE=-1.5708 LABEL=ab_sin_phi_6
ab_sin_phi_6_torsionsThe TORSION action with label ab_sin_phi_6_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_6_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=70,72,74,83
ab_sin_phi_6_refThe CONSTANT action with label ab_sin_phi_6_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_6_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_phi_6_coeffThe CONSTANT action with label ab_sin_phi_6_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_6_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_phi_6_combThe COMBINE action with label ab_sin_phi_6_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_6_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_phi_6_torsions,ab_sin_phi_6_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_6_cosThe CUSTOM action with label ab_sin_phi_6_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_6_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_phi_6_comb,ab_sin_phi_6_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_6The SUM action with label ab_sin_phi_6 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_6 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_phi_6_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=72,74,83,85 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_psi_6The ALPHABETA action with label ab_cos_psi_6 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_6 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=72,74,83,85 REFERENCE=0 LABEL=ab_cos_psi_6
ab_cos_psi_6_torsionsThe TORSION action with label ab_cos_psi_6_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_6_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=72,74,83,85
ab_cos_psi_6_refThe CONSTANT action with label ab_cos_psi_6_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_6_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_psi_6_coeffThe CONSTANT action with label ab_cos_psi_6_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_6_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_psi_6_combThe COMBINE action with label ab_cos_psi_6_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_6_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_psi_6_torsions,ab_cos_psi_6_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_6_cosThe CUSTOM action with label ab_cos_psi_6_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_6_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_psi_6_comb,ab_cos_psi_6_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_6The SUM action with label ab_cos_psi_6 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_6 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_psi_6_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=72,74,83,85 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_psi_6The ALPHABETA action with label ab_sin_psi_6 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_6 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=72,74,83,85 REFERENCE=-1.5708 LABEL=ab_sin_psi_6
ab_sin_psi_6_torsionsThe TORSION action with label ab_sin_psi_6_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_6_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=72,74,83,85
ab_sin_psi_6_refThe CONSTANT action with label ab_sin_psi_6_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_6_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_psi_6_coeffThe CONSTANT action with label ab_sin_psi_6_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_6_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_psi_6_combThe COMBINE action with label ab_sin_psi_6_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_6_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_psi_6_torsions,ab_sin_psi_6_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_6_cosThe CUSTOM action with label ab_sin_psi_6_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_6_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_psi_6_comb,ab_sin_psi_6_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_6The SUM action with label ab_sin_psi_6 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_6 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_psi_6_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=83,85,87,96 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_phi_7The ALPHABETA action with label ab_cos_phi_7 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_7 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=83,85,87,96 REFERENCE=0 LABEL=ab_cos_phi_7
ab_cos_phi_7_torsionsThe TORSION action with label ab_cos_phi_7_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_7_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=83,85,87,96
ab_cos_phi_7_refThe CONSTANT action with label ab_cos_phi_7_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_7_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_phi_7_coeffThe CONSTANT action with label ab_cos_phi_7_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_7_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_phi_7_combThe COMBINE action with label ab_cos_phi_7_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_7_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_phi_7_torsions,ab_cos_phi_7_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_7_cosThe CUSTOM action with label ab_cos_phi_7_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_7_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_phi_7_comb,ab_cos_phi_7_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_7The SUM action with label ab_cos_phi_7 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_7 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_phi_7_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=83,85,87,96 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_phi_7The ALPHABETA action with label ab_sin_phi_7 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_7 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=83,85,87,96 REFERENCE=-1.5708 LABEL=ab_sin_phi_7
ab_sin_phi_7_torsionsThe TORSION action with label ab_sin_phi_7_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_7_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=83,85,87,96
ab_sin_phi_7_refThe CONSTANT action with label ab_sin_phi_7_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_7_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_phi_7_coeffThe CONSTANT action with label ab_sin_phi_7_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_7_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_phi_7_combThe COMBINE action with label ab_sin_phi_7_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_7_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_phi_7_torsions,ab_sin_phi_7_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_7_cosThe CUSTOM action with label ab_sin_phi_7_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_7_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_phi_7_comb,ab_sin_phi_7_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_7The SUM action with label ab_sin_phi_7 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_7 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_phi_7_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=85,87,96,98 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_psi_7The ALPHABETA action with label ab_cos_psi_7 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_7 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=85,87,96,98 REFERENCE=0 LABEL=ab_cos_psi_7
ab_cos_psi_7_torsionsThe TORSION action with label ab_cos_psi_7_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_7_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=85,87,96,98
ab_cos_psi_7_refThe CONSTANT action with label ab_cos_psi_7_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_7_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_psi_7_coeffThe CONSTANT action with label ab_cos_psi_7_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_7_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_psi_7_combThe COMBINE action with label ab_cos_psi_7_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_7_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_psi_7_torsions,ab_cos_psi_7_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_7_cosThe CUSTOM action with label ab_cos_psi_7_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_7_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_psi_7_comb,ab_cos_psi_7_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_7The SUM action with label ab_cos_psi_7 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_7 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_psi_7_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=85,87,96,98 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_psi_7The ALPHABETA action with label ab_sin_psi_7 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_7 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=85,87,96,98 REFERENCE=-1.5708 LABEL=ab_sin_psi_7
ab_sin_psi_7_torsionsThe TORSION action with label ab_sin_psi_7_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_7_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=85,87,96,98
ab_sin_psi_7_refThe CONSTANT action with label ab_sin_psi_7_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_7_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_psi_7_coeffThe CONSTANT action with label ab_sin_psi_7_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_7_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_psi_7_combThe COMBINE action with label ab_sin_psi_7_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_7_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_psi_7_torsions,ab_sin_psi_7_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_7_cosThe CUSTOM action with label ab_sin_psi_7_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_7_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_psi_7_comb,ab_sin_psi_7_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_7The SUM action with label ab_sin_psi_7 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_7 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_psi_7_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=96,98,100,109 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_phi_8The ALPHABETA action with label ab_cos_phi_8 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_8 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=96,98,100,109 REFERENCE=0 LABEL=ab_cos_phi_8
ab_cos_phi_8_torsionsThe TORSION action with label ab_cos_phi_8_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_8_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=96,98,100,109
ab_cos_phi_8_refThe CONSTANT action with label ab_cos_phi_8_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_8_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_phi_8_coeffThe CONSTANT action with label ab_cos_phi_8_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_8_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_phi_8_combThe COMBINE action with label ab_cos_phi_8_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_8_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_phi_8_torsions,ab_cos_phi_8_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_8_cosThe CUSTOM action with label ab_cos_phi_8_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_8_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_phi_8_comb,ab_cos_phi_8_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_8The SUM action with label ab_cos_phi_8 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_8 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_phi_8_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=96,98,100,109 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_phi_8The ALPHABETA action with label ab_sin_phi_8 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_8 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=96,98,100,109 REFERENCE=-1.5708 LABEL=ab_sin_phi_8
ab_sin_phi_8_torsionsThe TORSION action with label ab_sin_phi_8_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_8_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=96,98,100,109
ab_sin_phi_8_refThe CONSTANT action with label ab_sin_phi_8_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_8_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_phi_8_coeffThe CONSTANT action with label ab_sin_phi_8_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_8_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_phi_8_combThe COMBINE action with label ab_sin_phi_8_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_8_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_phi_8_torsions,ab_sin_phi_8_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_8_cosThe CUSTOM action with label ab_sin_phi_8_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_8_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_phi_8_comb,ab_sin_phi_8_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_8The SUM action with label ab_sin_phi_8 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_8 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_phi_8_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=98,100,109,111 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_psi_8The ALPHABETA action with label ab_cos_psi_8 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_8 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=98,100,109,111 REFERENCE=0 LABEL=ab_cos_psi_8
ab_cos_psi_8_torsionsThe TORSION action with label ab_cos_psi_8_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_8_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=98,100,109,111
ab_cos_psi_8_refThe CONSTANT action with label ab_cos_psi_8_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_8_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_psi_8_coeffThe CONSTANT action with label ab_cos_psi_8_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_8_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_psi_8_combThe COMBINE action with label ab_cos_psi_8_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_8_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_psi_8_torsions,ab_cos_psi_8_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_8_cosThe CUSTOM action with label ab_cos_psi_8_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_8_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_psi_8_comb,ab_cos_psi_8_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_8The SUM action with label ab_cos_psi_8 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_8 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_psi_8_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=98,100,109,111 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_psi_8The ALPHABETA action with label ab_sin_psi_8 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_8 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=98,100,109,111 REFERENCE=-1.5708 LABEL=ab_sin_psi_8
ab_sin_psi_8_torsionsThe TORSION action with label ab_sin_psi_8_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_8_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=98,100,109,111
ab_sin_psi_8_refThe CONSTANT action with label ab_sin_psi_8_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_8_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_psi_8_coeffThe CONSTANT action with label ab_sin_psi_8_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_8_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_psi_8_combThe COMBINE action with label ab_sin_psi_8_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_8_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_psi_8_torsions,ab_sin_psi_8_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_8_cosThe CUSTOM action with label ab_sin_psi_8_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_8_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_psi_8_comb,ab_sin_psi_8_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_8The SUM action with label ab_sin_psi_8 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_8 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_psi_8_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=109,111,113,122 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_phi_9The ALPHABETA action with label ab_cos_phi_9 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_9 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=109,111,113,122 REFERENCE=0 LABEL=ab_cos_phi_9
ab_cos_phi_9_torsionsThe TORSION action with label ab_cos_phi_9_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_9_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=109,111,113,122
ab_cos_phi_9_refThe CONSTANT action with label ab_cos_phi_9_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_9_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_phi_9_coeffThe CONSTANT action with label ab_cos_phi_9_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_9_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_phi_9_combThe COMBINE action with label ab_cos_phi_9_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_9_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_phi_9_torsions,ab_cos_phi_9_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_9_cosThe CUSTOM action with label ab_cos_phi_9_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_9_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_phi_9_comb,ab_cos_phi_9_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_phi_9The SUM action with label ab_cos_phi_9 calculates the following quantities: Quantity | Type | Description |
ab_cos_phi_9 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_phi_9_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=109,111,113,122 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_phi_9The ALPHABETA action with label ab_sin_phi_9 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_9 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=109,111,113,122 REFERENCE=-1.5708 LABEL=ab_sin_phi_9
ab_sin_phi_9_torsionsThe TORSION action with label ab_sin_phi_9_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_9_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=109,111,113,122
ab_sin_phi_9_refThe CONSTANT action with label ab_sin_phi_9_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_9_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_phi_9_coeffThe CONSTANT action with label ab_sin_phi_9_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_9_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_phi_9_combThe COMBINE action with label ab_sin_phi_9_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_9_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_phi_9_torsions,ab_sin_phi_9_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_9_cosThe CUSTOM action with label ab_sin_phi_9_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_9_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_phi_9_comb,ab_sin_phi_9_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_phi_9The SUM action with label ab_sin_phi_9 calculates the following quantities: Quantity | Type | Description |
ab_sin_phi_9 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_phi_9_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=111,113,122,124 REFERENCEthe reference values for each of the torsional angles=0 LABELa label for the action so that its output can be referenced in the input to other actions=ab_cos_psi_9The ALPHABETA action with label ab_cos_psi_9 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_9 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=111,113,122,124 REFERENCE=0 LABEL=ab_cos_psi_9
ab_cos_psi_9_torsionsThe TORSION action with label ab_cos_psi_9_torsions calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_9_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=111,113,122,124
ab_cos_psi_9_refThe CONSTANT action with label ab_cos_psi_9_ref calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_9_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=0
ab_cos_psi_9_coeffThe CONSTANT action with label ab_cos_psi_9_coeff calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_9_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_cos_psi_9_combThe COMBINE action with label ab_cos_psi_9_comb calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_9_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_cos_psi_9_torsions,ab_cos_psi_9_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_9_cosThe CUSTOM action with label ab_cos_psi_9_cos calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_9_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_cos_psi_9_comb,ab_cos_psi_9_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_cos_psi_9The SUM action with label ab_cos_psi_9 calculates the following quantities: Quantity | Type | Description |
ab_cos_psi_9 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_cos_psi_9_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input --- ALPHABETAMeasures a distance including pbc between the instantaneous values of a set of torsional angles and set of reference values. This action is a shortcut. More details ATOMS1the atoms involved for each of the torsions you wish to calculate=111,113,122,124 REFERENCEthe reference values for each of the torsional angles=-1.5708 LABELa label for the action so that its output can be referenced in the input to other actions=ab_sin_psi_9The ALPHABETA action with label ab_sin_psi_9 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_9 | scalar | the alpha beta CV |
# ALPHABETA ATOMS1=111,113,122,124 REFERENCE=-1.5708 LABEL=ab_sin_psi_9
ab_sin_psi_9_torsionsThe TORSION action with label ab_sin_psi_9_torsions calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_9_torsions | vector | the TORSION for each set of specified atoms |
: TORSIONCalculate one or multiple torsional angles. More details ATOMS1the four atoms involved in the torsional angle=111,113,122,124
ab_sin_psi_9_refThe CONSTANT action with label ab_sin_psi_9_ref calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_9_ref | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=-1.5708
ab_sin_psi_9_coeffThe CONSTANT action with label ab_sin_psi_9_coeff calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_9_coeff | scalar | the constant value that was read from the plumed input |
: CONSTANTCreate a constant value that can be passed to actions More details VALUESthe numbers that are in your constant value=1
ab_sin_psi_9_combThe COMBINE action with label ab_sin_psi_9_comb calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_9_comb | vector | the vector obtained by doing an element-wise application of a linear compbination to the input vectors |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=ab_sin_psi_9_torsions,ab_sin_psi_9_ref COEFFICIENTS the coefficients of the arguments in your function=1,-1 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_9_cosThe CUSTOM action with label ab_sin_psi_9_cos calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_9_cos | vector | the vector obtained by doing an element-wise application of an arbitrary function to the input vectors |
: CUSTOMCalculate a combination of variables using a custom expression. More details ARGthe values input to this function=ab_sin_psi_9_comb,ab_sin_psi_9_coeff FUNCthe function you wish to evaluate=y*(0.5+0.5*cos(x)) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
ab_sin_psi_9The SUM action with label ab_sin_psi_9 calculates the following quantities: Quantity | Type | Description |
ab_sin_psi_9 | scalar | the sum of all the elements in the input vector |
: SUMCalculate the sum of the arguments More details ARGthe values input to this function=ab_sin_psi_9_cos PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
# --- End of included input ---
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_phi_1The COMBINE action with label cos_phi_1 calculates the following quantities: Quantity | Type | Description |
cos_phi_1 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_phi_1 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_phi_1The COMBINE action with label sin_phi_1 calculates the following quantities: Quantity | Type | Description |
sin_phi_1 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_phi_1 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_psi_1The COMBINE action with label cos_psi_1 calculates the following quantities: Quantity | Type | Description |
cos_psi_1 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_psi_1 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_psi_1The COMBINE action with label sin_psi_1 calculates the following quantities: Quantity | Type | Description |
sin_psi_1 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_psi_1 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_phi_2The COMBINE action with label cos_phi_2 calculates the following quantities: Quantity | Type | Description |
cos_phi_2 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_phi_2 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_phi_2The COMBINE action with label sin_phi_2 calculates the following quantities: Quantity | Type | Description |
sin_phi_2 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_phi_2 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_psi_2The COMBINE action with label cos_psi_2 calculates the following quantities: Quantity | Type | Description |
cos_psi_2 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_psi_2 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_psi_2The COMBINE action with label sin_psi_2 calculates the following quantities: Quantity | Type | Description |
sin_psi_2 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_psi_2 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_phi_3The COMBINE action with label cos_phi_3 calculates the following quantities: Quantity | Type | Description |
cos_phi_3 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_phi_3 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_phi_3The COMBINE action with label sin_phi_3 calculates the following quantities: Quantity | Type | Description |
sin_phi_3 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_phi_3 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_psi_3The COMBINE action with label cos_psi_3 calculates the following quantities: Quantity | Type | Description |
cos_psi_3 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_psi_3 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_psi_3The COMBINE action with label sin_psi_3 calculates the following quantities: Quantity | Type | Description |
sin_psi_3 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_psi_3 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_phi_4The COMBINE action with label cos_phi_4 calculates the following quantities: Quantity | Type | Description |
cos_phi_4 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_phi_4 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_phi_4The COMBINE action with label sin_phi_4 calculates the following quantities: Quantity | Type | Description |
sin_phi_4 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_phi_4 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_psi_4The COMBINE action with label cos_psi_4 calculates the following quantities: Quantity | Type | Description |
cos_psi_4 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_psi_4 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_psi_4The COMBINE action with label sin_psi_4 calculates the following quantities: Quantity | Type | Description |
sin_psi_4 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_psi_4 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_phi_5The COMBINE action with label cos_phi_5 calculates the following quantities: Quantity | Type | Description |
cos_phi_5 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_phi_5 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_phi_5The COMBINE action with label sin_phi_5 calculates the following quantities: Quantity | Type | Description |
sin_phi_5 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_phi_5 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_psi_5The COMBINE action with label cos_psi_5 calculates the following quantities: Quantity | Type | Description |
cos_psi_5 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_psi_5 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_psi_5The COMBINE action with label sin_psi_5 calculates the following quantities: Quantity | Type | Description |
sin_psi_5 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_psi_5 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_phi_6The COMBINE action with label cos_phi_6 calculates the following quantities: Quantity | Type | Description |
cos_phi_6 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_phi_6 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_phi_6The COMBINE action with label sin_phi_6 calculates the following quantities: Quantity | Type | Description |
sin_phi_6 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_phi_6 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_psi_6The COMBINE action with label cos_psi_6 calculates the following quantities: Quantity | Type | Description |
cos_psi_6 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_psi_6 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_psi_6The COMBINE action with label sin_psi_6 calculates the following quantities: Quantity | Type | Description |
sin_psi_6 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_psi_6 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_phi_7The COMBINE action with label cos_phi_7 calculates the following quantities: Quantity | Type | Description |
cos_phi_7 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_phi_7 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_phi_7The COMBINE action with label sin_phi_7 calculates the following quantities: Quantity | Type | Description |
sin_phi_7 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_phi_7 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_psi_7The COMBINE action with label cos_psi_7 calculates the following quantities: Quantity | Type | Description |
cos_psi_7 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_psi_7 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_psi_7The COMBINE action with label sin_psi_7 calculates the following quantities: Quantity | Type | Description |
sin_psi_7 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_psi_7 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_phi_8The COMBINE action with label cos_phi_8 calculates the following quantities: Quantity | Type | Description |
cos_phi_8 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_phi_8 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_phi_8The COMBINE action with label sin_phi_8 calculates the following quantities: Quantity | Type | Description |
sin_phi_8 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_phi_8 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_psi_8The COMBINE action with label cos_psi_8 calculates the following quantities: Quantity | Type | Description |
cos_psi_8 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_psi_8 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_psi_8The COMBINE action with label sin_psi_8 calculates the following quantities: Quantity | Type | Description |
sin_psi_8 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_psi_8 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_phi_9The COMBINE action with label cos_phi_9 calculates the following quantities: Quantity | Type | Description |
cos_phi_9 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_phi_9 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_phi_9The COMBINE action with label sin_phi_9 calculates the following quantities: Quantity | Type | Description |
sin_phi_9 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_phi_9 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=cos_psi_9The COMBINE action with label cos_psi_9 calculates the following quantities: Quantity | Type | Description |
cos_psi_9 | scalar | a linear compbination |
ARGthe values input to this function=ab_cos_psi_9 COEFFICIENTS the coefficients of the arguments in your function=2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
COMBINECalculate a polynomial combination of a set of other variables. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=sin_psi_9The COMBINE action with label sin_psi_9 calculates the following quantities: Quantity | Type | Description |
sin_psi_9 | scalar | a linear compbination |
ARGthe values input to this function=ab_sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=-2.0 PARAMETERS the parameters of the arguments in your function=0.5 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
... COMBINE
l1_1The COMBINE action with label l1_1 calculates the following quantities: Quantity | Type | Description |
l1_1 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=0.022033991292,0.059003870934,0.017931230366,0.053898576647,0.154264256358,0.155822187662,-0.080101840198,0.137214809656,0.003846980864,-0.230692759156,-0.055490542203,-0.014143639244,0.142150193453,-0.032307855785,0.102129973471,0.332117617130,-0.199312701821,0.222142055631,-0.148294225335,0.226464077830,0.019747139886,0.196322634816,-0.134400904179,0.040241744369,-0.358192980289,0.108958266675,-0.226256370544,0.197444394231,-0.007903333753,0.213765725493,-0.038658928126,0.283636003733,0.089542724192,0.056532349437,-0.089920923114,0.133535221219 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_2The COMBINE action with label l1_2 calculates the following quantities: Quantity | Type | Description |
l1_2 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=-0.243038296700,0.158944025636,-0.243057504296,0.115482948720,0.027971033007,0.142291426659,-0.102761723101,0.176508396864,0.180477023125,0.059515506029,0.335479915142,-0.207366332412,0.186509102583,-0.032608296722,0.272148042917,0.217861205339,-0.057685568929,0.230796977878,-0.087654836476,0.326141715050,-0.071027815342,0.322222262621,-0.287975281477,0.374266773462,0.022790437564,0.148835092783,-0.006767697632,-0.008586199023,-0.164262995124,0.011925060302,-0.092470549047,0.183558553457,-0.244156271219,0.134006664157,-0.031868904829,0.064501278102 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_3The COMBINE action with label l1_3 calculates the following quantities: Quantity | Type | Description |
l1_3 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=0.088763490319,-0.003895276692,0.019718995318,-0.207676768303,0.218348771334,0.108705282211,0.146902084351,-0.014571925625,-0.236184120178,0.063333518803,0.118281811476,0.223841130733,0.136209607124,0.051656909287,0.219709798694,0.245080068707,0.031672894955,0.099360741675,-0.004408978857,0.067081183195,-0.081169009209,0.222162500024,-0.136013060808,0.186461776495,-0.170649141073,-0.004252443090,-0.088881202042,0.195460945368,0.019271126017,0.114537887275,-0.292163670063,0.062111958861,-0.300487309694,-0.048450220376,-0.047099936754,0.017949586734 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_4The COMBINE action with label l1_4 calculates the following quantities: Quantity | Type | Description |
l1_4 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=0.151644378901,0.214419633150,0.170604482293,0.156603977084,-0.168806701899,0.095249898732,-0.062465779483,0.171159520745,-0.256298303604,-0.002493018284,0.069825254381,0.221830248833,0.151679337025,0.016546515748,0.112301334739,0.033766571432,-0.205478444695,0.246716171503,0.041759986430,0.039642311633,-0.024670049548,0.147513493896,-0.011798198335,-0.118729054928,-0.367341190577,0.215228095651,-0.158143877983,0.149231269956,-0.001481899060,0.224393188953,-0.190232440829,0.289274692535,0.125065267086,-0.089966125786,-0.237655803561,0.186225116253 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_5The COMBINE action with label l1_5 calculates the following quantities: Quantity | Type | Description |
l1_5 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=0.160700723529,-0.014043479227,0.163428395987,0.089654408395,-0.021982766688,0.129680216312,0.103403300047,-0.105182535946,-0.289333403111,-0.090564973652,-0.231223896146,0.065900556743,0.124446213245,-0.004724028520,0.121382668614,0.227823108435,-0.097260504961,0.163644060493,0.015856385231,0.279423028231,0.068269893527,0.224818125367,-0.157480910420,0.140207424760,-0.025737101212,0.170819312334,-0.170070141554,0.037029121071,-0.267358958721,0.300860553980,-0.181063488126,0.219668850303,-0.384266465902,0.237666845322,-0.274922668934,-0.008055377752 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_6The COMBINE action with label l1_6 calculates the following quantities: Quantity | Type | Description |
l1_6 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=-0.032677501440,-0.068945057690,-0.103253468871,0.126326829195,-0.234780952334,0.016240598634,-0.278462797403,-0.013748660684,0.150729551911,0.178346440196,-0.049771811813,0.134614512324,-0.379575580359,0.183324262500,-0.158910736442,0.063247404993,-0.008783090860,0.139691635966,0.049396116287,0.160944864154,-0.324123829603,0.055688045919,-0.298429846764,0.250964313745,0.035668078810,0.052866574377,-0.059707198292,0.001691299840,0.073435291648,0.131826058030,-0.054280892015,-0.072966203094,-0.241602346301,0.081279881299,-0.118656754494,0.050781346858 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_7The COMBINE action with label l1_7 calculates the following quantities: Quantity | Type | Description |
l1_7 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=-0.384028851986,0.002179145114,0.069904901087,-0.031254872680,-0.146448165178,-0.048116832972,-0.027737967670,-0.269239932299,0.192374512553,-0.012326702476,-0.212380245328,-0.099619284272,-0.188884794712,-0.017224151641,0.245280951262,0.165982887149,0.125693008304,0.202461510897,-0.055871739984,-0.010625764728,-0.155932486057,0.152439072728,-0.189319223166,0.296591848135,-0.259799569845,0.131234243512,-0.144626662135,0.031426541507,0.283890187740,-0.026046238840,0.355983972549,0.001632302883,-0.467058271170,-0.044434256852,0.030440568924,0.160070821643 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_8The COMBINE action with label l1_8 calculates the following quantities: Quantity | Type | Description |
l1_8 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=-0.550383687019,0.132480174303,-0.307270288467,0.154058307409,-0.368209540844,-0.077885977924,-0.280585974455,0.080043181777,0.199049443007,-0.021105358377,0.285799145699,0.043139979243,0.172374248505,0.052265763283,0.315094053745,0.100609354675,0.111177332699,-0.107163235545,-0.079375863075,0.113585710526,-0.134666040540,0.042777705938,-0.051240548491,0.044112797827,0.180944859982,-0.096120126545,0.005312348250,-0.079676568508,0.370064169168,0.051076747477,0.230079531670,-0.100667811930,-0.512571394444,0.086169540882,0.038589213043,0.076008766890 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_9The COMBINE action with label l1_9 calculates the following quantities: Quantity | Type | Description |
l1_9 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=0.114928476512,0.192200988531,0.054896343499,-0.055173281580,0.114753894508,0.056081041694,0.294854044914,-0.204692259431,0.132440447807,0.402411550283,0.044558461756,0.114889338613,-0.286868602037,0.289315819740,-0.065737850964,0.175090864301,-0.203753203154,0.181558594108,-0.149703696370,0.180402785540,-0.135723158717,-0.003157323226,-0.250598579645,0.112361080945,0.045257970691,0.044139325619,-0.176576912403,0.109725818038,0.220393359661,0.093782648444,0.189982175827,0.043247610331,-0.370799362659,0.228303700686,0.078139618039,-0.077182121575 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_10The COMBINE action with label l1_10 calculates the following quantities: Quantity | Type | Description |
l1_10 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=0.093939945102,0.002581041539,0.054403636605,0.107012622058,-0.066312447190,0.221823528409,-0.062182266265,-0.083114817739,-0.029250383377,-0.009764003567,0.114861987531,0.162987560034,0.251409143209,0.138776749372,-0.087662182748,0.033509273082,-0.148113518953,0.208709940314,-0.075284816325,0.211400344968,-0.064877562225,0.131264224648,-0.026251604781,0.183562844992,-0.176890924573,0.136934354901,-0.230902045965,0.035930603743,0.134574130177,0.229655832052,0.076839037240,0.297851771116,0.097653046250,0.113404445350,0.117350906134,0.002736533526 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_11The COMBINE action with label l1_11 calculates the following quantities: Quantity | Type | Description |
l1_11 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=-0.037636730820,-0.061213735491,-0.042634438723,0.030937639996,-0.063708148897,0.008457277901,-0.236888125539,-0.025589166209,0.435409963131,0.492515295744,-0.676862657070,-0.689707517624,-0.345000684261,0.070560388267,-0.244782418013,0.176901057363,0.110071159899,0.094876542687,-0.010313079692,0.009710586630,-0.058961689472,-0.021051367745,0.195215567946,-0.181088119745,0.091225102544,-0.066756911576,0.178753286600,-0.084426634014,0.013276450336,-0.076549917459,0.199445918202,-0.153693184257,0.037724919617,-0.073423452675,0.063535675406,0.053928732872 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_12The COMBINE action with label l1_12 calculates the following quantities: Quantity | Type | Description |
l1_12 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=0.155448094010,-0.012479105033,0.269465148449,-0.091537162662,0.271468311548,-0.056714411825,0.063513845205,-0.104005753994,0.050362821668,0.008692010306,0.034735724330,0.072353102267,0.242865025997,0.168595463037,0.218438297510,-0.065684840083,-0.185787394643,0.164743989706,0.029730306938,0.284289836884,0.009563293308,0.026440229267,-0.109070375562,0.193712234497,-0.074588239193,0.143460959196,0.045934896916,0.086587399244,-0.456234633923,0.042941041291,0.029564157128,-0.044417634606,-0.566837251186,0.129063159227,-0.094065025449,-0.167860284448 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_13The COMBINE action with label l1_13 calculates the following quantities: Quantity | Type | Description |
l1_13 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=0.054385572672,0.031466644257,-0.012106282637,0.001746793976,0.045425537974,-0.044226273894,0.164070159197,-0.200497701764,-0.074273101985,-0.053197730333,0.241601556540,0.155097618699,0.083439715207,0.146705597639,0.320333361626,0.227401211858,-0.074771068990,-0.071811631322,-0.109345793724,0.228332668543,0.087785162032,-0.082025788724,-0.029620138928,-0.035792235285,0.097860656679,-0.011073188856,-0.068378925323,0.206161424518,-0.248086795211,-0.093541726470,-0.425050228834,0.180753454566,-0.432889968157,-0.193639457226,0.109378315508,0.236474230886 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_14The COMBINE action with label l1_14 calculates the following quantities: Quantity | Type | Description |
l1_14 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=-0.042907729745,0.131899327040,0.008593367413,0.177102774382,0.204411834478,0.092541292310,0.100563809276,0.052728150040,0.403371453285,-0.094964437187,0.505736887455,0.039682034403,0.119218021631,0.133172571659,0.163364276290,-0.011043490842,-0.294545203447,0.111398577690,-0.225310042500,0.110373251140,-0.136040836573,0.172836080194,-0.104490377009,0.238848954439,-0.278464883566,0.095345124602,-0.117591440678,0.097754642367,-0.175684556365,0.167301461101,0.000194345950,-0.027735060081,-0.231791943312,0.114009454846,-0.071744039655,0.108465597034 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_15The COMBINE action with label l1_15 calculates the following quantities: Quantity | Type | Description |
l1_15 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=-0.246827572584,0.148301228881,-0.256206989288,0.349469244480,0.015982924029,-0.024424416944,0.043845824897,0.309837520123,0.606250286102,0.109041854739,0.512108683586,-0.238638162613,-0.243913009763,0.057550638914,-0.202464357018,0.037404593080,-0.142583221197,0.022765588015,-0.071970194578,-0.069431096315,0.198271796107,-0.153881222010,0.029334969819,-0.025182025507,0.121298320591,-0.058757603168,0.043318942189,-0.086701907218,0.235199764371,-0.005818596110,0.183755561709,0.031904302537,0.313215851784,0.103786952794,0.044195871800,-0.018795538694 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1_16The COMBINE action with label l1_16 calculates the following quantities: Quantity | Type | Description |
l1_16 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=cos_phi_1,cos_psi_1,cos_phi_2,cos_psi_2,cos_phi_3,cos_psi_3,cos_phi_4,cos_psi_4,cos_phi_5,cos_psi_5,cos_phi_6,cos_psi_6,cos_phi_7,cos_psi_7,cos_phi_8,cos_psi_8,cos_phi_9,cos_psi_9,sin_phi_1,sin_psi_1,sin_phi_2,sin_psi_2,sin_phi_3,sin_psi_3,sin_phi_4,sin_psi_4,sin_phi_5,sin_psi_5,sin_phi_6,sin_psi_6,sin_phi_7,sin_psi_7,sin_phi_8,sin_psi_8,sin_phi_9,sin_psi_9 COEFFICIENTS the coefficients of the arguments in your function=-0.059944082052,0.015088113956,-0.144582211971,0.046890899539,-0.289699316025,0.079113192856,-0.042257539928,0.150286406279,-0.564258515835,0.112707346678,-0.240464150906,0.603658020496,-0.269362151623,0.079800941050,-0.053792621940,0.082854397595,0.012860923074,-0.043820425868,-0.018410455436,-0.095483571291,0.017824647948,0.062303267419,0.111384995282,-0.093107908964,-0.148956596851,0.069233804941,0.075984448195,-0.162442624569,0.058128159493,-0.091542579234,-0.031464319676,-0.047156333923,-0.190963923931,-0.038758646697,-0.080986417830,-0.016040157527 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_1The MATHEVAL action with label l1r_1 calculates the following quantities: Quantity | Type | Description |
l1r_1 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_1 FUNCthe function you wish to evaluate=step(x+0.119122728705)*(x+0.119122728705) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_2The MATHEVAL action with label l1r_2 calculates the following quantities: Quantity | Type | Description |
l1r_2 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_2 FUNCthe function you wish to evaluate=step(x+0.097003936768)*(x+0.097003936768) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_3The MATHEVAL action with label l1r_3 calculates the following quantities: Quantity | Type | Description |
l1r_3 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_3 FUNCthe function you wish to evaluate=step(x+0.149410635233)*(x+0.149410635233) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_4The MATHEVAL action with label l1r_4 calculates the following quantities: Quantity | Type | Description |
l1r_4 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_4 FUNCthe function you wish to evaluate=step(x-0.092837870121)*(x-0.092837870121) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_5The MATHEVAL action with label l1r_5 calculates the following quantities: Quantity | Type | Description |
l1r_5 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_5 FUNCthe function you wish to evaluate=step(x-0.064675584435)*(x-0.064675584435) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_6The MATHEVAL action with label l1r_6 calculates the following quantities: Quantity | Type | Description |
l1r_6 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_6 FUNCthe function you wish to evaluate=step(x+0.093721844256)*(x+0.093721844256) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_7The MATHEVAL action with label l1r_7 calculates the following quantities: Quantity | Type | Description |
l1r_7 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_7 FUNCthe function you wish to evaluate=step(x+0.102653734386)*(x+0.102653734386) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_8The MATHEVAL action with label l1r_8 calculates the following quantities: Quantity | Type | Description |
l1r_8 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_8 FUNCthe function you wish to evaluate=step(x+0.013488915749)*(x+0.013488915749) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_9The MATHEVAL action with label l1r_9 calculates the following quantities: Quantity | Type | Description |
l1r_9 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_9 FUNCthe function you wish to evaluate=step(x+0.263587653637)*(x+0.263587653637) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_10The MATHEVAL action with label l1r_10 calculates the following quantities: Quantity | Type | Description |
l1r_10 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_10 FUNCthe function you wish to evaluate=step(x+0.094580501318)*(x+0.094580501318) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_11The MATHEVAL action with label l1r_11 calculates the following quantities: Quantity | Type | Description |
l1r_11 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_11 FUNCthe function you wish to evaluate=step(x-0.193641513586)*(x-0.193641513586) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_12The MATHEVAL action with label l1r_12 calculates the following quantities: Quantity | Type | Description |
l1r_12 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_12 FUNCthe function you wish to evaluate=step(x+0.075446195900)*(x+0.075446195900) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_13The MATHEVAL action with label l1r_13 calculates the following quantities: Quantity | Type | Description |
l1r_13 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_13 FUNCthe function you wish to evaluate=step(x+0.037656068802)*(x+0.037656068802) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_14The MATHEVAL action with label l1r_14 calculates the following quantities: Quantity | Type | Description |
l1r_14 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_14 FUNCthe function you wish to evaluate=step(x+0.287805765867)*(x+0.287805765867) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_15The MATHEVAL action with label l1r_15 calculates the following quantities: Quantity | Type | Description |
l1r_15 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_15 FUNCthe function you wish to evaluate=step(x-0.070369429886)*(x-0.070369429886) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l1r_16The MATHEVAL action with label l1r_16 calculates the following quantities: Quantity | Type | Description |
l1r_16 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l1_16 FUNCthe function you wish to evaluate=step(x-0.102398492396)*(x-0.102398492396) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_1The COMBINE action with label l2_1 calculates the following quantities: Quantity | Type | Description |
l2_1 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=0.126633092761,-0.100206896663,0.009692634456,0.015404311009,-0.128456845880,-0.117020078003,-0.191589310765,-0.196369603276,-0.207597285509,-0.038097556680,-0.127641052008,-0.015919661149,-0.132852748036,-0.097846105695,-0.034991092980,-0.146212667227 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_2The COMBINE action with label l2_2 calculates the following quantities: Quantity | Type | Description |
l2_2 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=0.094185665250,-0.192152410746,-0.075255334377,-0.120509587228,0.065447844565,-0.271646976471,-0.235076338053,-0.076754145324,-0.085166275501,-0.083648912609,0.077227711678,0.169553682208,-0.134598612785,-0.018306009471,-0.192690148950,-0.108949072659 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_3The COMBINE action with label l2_3 calculates the following quantities: Quantity | Type | Description |
l2_3 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=0.092839553952,0.333849340677,0.091032758355,-0.025297623128,-0.244456470013,0.126676723361,0.134951144457,-0.106441594660,0.139905914664,-0.331293553114,-1.449368357658,-0.297199845314,-0.103261657059,0.374134957790,-0.781659066677,-1.001386046410 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_4The COMBINE action with label l2_4 calculates the following quantities: Quantity | Type | Description |
l2_4 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=0.126899942756,-0.177899539471,-0.253680258989,-0.019859168679,-0.409646511078,-0.087645582855,-0.437608659267,-1.301970481873,0.220324814320,0.094101630151,-0.092060402036,-0.142522200942,-0.045854758471,0.111362792552,0.261924713850,-0.112082108855 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_5The COMBINE action with label l2_5 calculates the following quantities: Quantity | Type | Description |
l2_5 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=0.246469303966,-0.424002736807,0.272555917501,0.050244767219,-0.138706728816,0.123924575746,0.245640173554,0.261167645454,0.331640005112,0.134759828448,0.254481613636,0.036323640496,0.376787573099,-0.117129862309,0.605235636234,-0.125659912825 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_6The COMBINE action with label l2_6 calculates the following quantities: Quantity | Type | Description |
l2_6 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=-0.118194237351,0.246948301792,-0.204874321818,0.106300801039,-0.315075397491,0.118298418820,0.056799706072,-0.260864704847,-0.034033488482,0.139993146062,-1.259380459785,-0.051474280655,-0.219723373652,0.351927220821,-0.321076482534,-0.593852698803 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_7The COMBINE action with label l2_7 calculates the following quantities: Quantity | Type | Description |
l2_7 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=0.078982234001,-0.131633564830,0.236449897289,-0.253935545683,0.297982901335,-0.183350443840,0.241734504700,0.884091436863,0.507916986942,0.057180199772,0.513363838196,0.798645317554,0.024166597053,-0.045760396868,0.122462168336,0.611643075943 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_8The COMBINE action with label l2_8 calculates the following quantities: Quantity | Type | Description |
l2_8 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=0.085708260536,-0.229204043746,-0.257656186819,-0.225256890059,0.045018933713,-0.285770475864,-0.210375040770,-0.159580051899,0.007964172401,0.198192328215,-0.014702507295,0.072322554886,-0.076557412744,-0.088839687407,-0.090042039752,0.113832645118 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_9The COMBINE action with label l2_9 calculates the following quantities: Quantity | Type | Description |
l2_9 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=-0.053101085126,0.014442627318,0.159063875675,-0.037932045758,-0.256218910217,0.071841947734,0.184812143445,0.562313675880,0.068478554487,0.174577102065,0.466747343540,0.315911054611,0.304946720600,-0.091492876410,0.544071912766,0.493668615818 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_10The COMBINE action with label l2_10 calculates the following quantities: Quantity | Type | Description |
l2_10 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=-0.188803926110,0.157715067267,-0.132298946381,-0.324217140675,0.002397845499,0.290318965912,-0.195228815079,-0.158741757274,0.330835521221,-0.267335385084,-1.651470422745,0.058658499271,-0.017554536462,0.442655414343,-0.513406932354,-1.122688770294 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_11The COMBINE action with label l2_11 calculates the following quantities: Quantity | Type | Description |
l2_11 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=0.195893302560,0.362818747759,-0.223858818412,0.037726797163,-0.384147375822,0.268032997847,-0.030827792361,-0.545177698135,0.327076792717,0.193313509226,-1.373144865036,-0.525230467319,-0.568221509457,0.474893182516,-0.612447023392,-0.903364121914 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_12The COMBINE action with label l2_12 calculates the following quantities: Quantity | Type | Description |
l2_12 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=-0.197329431772,0.135872200131,-0.053275577724,-0.156899333000,-0.311971932650,-0.025202106684,-0.030309524387,-0.005133708473,-0.059368442744,0.000628212641,0.116135664284,0.148768007755,0.013075150549,-0.255670219660,-0.048764295876,0.042990636081 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_13The COMBINE action with label l2_13 calculates the following quantities: Quantity | Type | Description |
l2_13 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=-0.057453580201,-0.120409183204,0.238592416048,-0.136703282595,0.240874394774,0.135028958321,0.381058156490,0.530922472477,0.200587257743,0.244623184204,0.143757760525,0.545476555824,0.230906337500,-0.139241427183,0.495817452669,0.213566049933 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_14The COMBINE action with label l2_14 calculates the following quantities: Quantity | Type | Description |
l2_14 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=0.093418598175,-0.151201650500,0.065442673862,0.022163305432,-0.148102298379,-0.086594358087,0.161447495222,-0.184138536453,-0.181062087417,0.182087227702,-0.034433282912,-0.219533145428,-0.296699225903,-0.193254679441,-0.212820708752,-0.021423961967 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_15The COMBINE action with label l2_15 calculates the following quantities: Quantity | Type | Description |
l2_15 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=0.041465751827,0.015177750029,0.108166776597,-0.020488610491,-0.201132088900,0.004539734684,-0.124427430332,0.083986967802,0.116437546909,-0.089832879603,-0.068465180695,-0.214655160904,0.168388485909,-0.282250702381,-0.089515261352,-0.266287773848 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2_16The COMBINE action with label l2_16 calculates the following quantities: Quantity | Type | Description |
l2_16 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l1r_1,l1r_2,l1r_3,l1r_4,l1r_5,l1r_6,l1r_7,l1r_8,l1r_9,l1r_10,l1r_11,l1r_12,l1r_13,l1r_14,l1r_15,l1r_16 COEFFICIENTS the coefficients of the arguments in your function=-0.093080483377,0.317220687866,-0.143713906407,-0.447891950607,-0.100454531610,0.255385667086,0.214501380920,0.096891649067,0.203119829297,-0.207454219460,-1.386388659477,-0.013464795426,0.078312322497,0.221555337310,-0.761879205704,-0.942821562290 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_1The MATHEVAL action with label l2r_1 calculates the following quantities: Quantity | Type | Description |
l2r_1 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_1 FUNCthe function you wish to evaluate=step(x+0.081181496382)*(x+0.081181496382) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_2The MATHEVAL action with label l2r_2 calculates the following quantities: Quantity | Type | Description |
l2r_2 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_2 FUNCthe function you wish to evaluate=step(x-0.075871683657)*(x-0.075871683657) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_3The MATHEVAL action with label l2r_3 calculates the following quantities: Quantity | Type | Description |
l2r_3 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_3 FUNCthe function you wish to evaluate=step(x-0.104721918702)*(x-0.104721918702) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_4The MATHEVAL action with label l2r_4 calculates the following quantities: Quantity | Type | Description |
l2r_4 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_4 FUNCthe function you wish to evaluate=step(x-0.129437819123)*(x-0.129437819123) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_5The MATHEVAL action with label l2r_5 calculates the following quantities: Quantity | Type | Description |
l2r_5 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_5 FUNCthe function you wish to evaluate=step(x+0.285767644644)*(x+0.285767644644) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_6The MATHEVAL action with label l2r_6 calculates the following quantities: Quantity | Type | Description |
l2r_6 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_6 FUNCthe function you wish to evaluate=step(x+0.161212027073)*(x+0.161212027073) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_7The MATHEVAL action with label l2r_7 calculates the following quantities: Quantity | Type | Description |
l2r_7 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_7 FUNCthe function you wish to evaluate=step(x-0.078063592315)*(x-0.078063592315) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_8The MATHEVAL action with label l2r_8 calculates the following quantities: Quantity | Type | Description |
l2r_8 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_8 FUNCthe function you wish to evaluate=step(x+0.163290351629)*(x+0.163290351629) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_9The MATHEVAL action with label l2r_9 calculates the following quantities: Quantity | Type | Description |
l2r_9 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_9 FUNCthe function you wish to evaluate=step(x-0.218352094293)*(x-0.218352094293) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_10The MATHEVAL action with label l2r_10 calculates the following quantities: Quantity | Type | Description |
l2r_10 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_10 FUNCthe function you wish to evaluate=step(x+0.236035346985)*(x+0.236035346985) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_11The MATHEVAL action with label l2r_11 calculates the following quantities: Quantity | Type | Description |
l2r_11 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_11 FUNCthe function you wish to evaluate=step(x+0.400238811970)*(x+0.400238811970) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_12The MATHEVAL action with label l2r_12 calculates the following quantities: Quantity | Type | Description |
l2r_12 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_12 FUNCthe function you wish to evaluate=step(x+0.131798222661)*(x+0.131798222661) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_13The MATHEVAL action with label l2r_13 calculates the following quantities: Quantity | Type | Description |
l2r_13 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_13 FUNCthe function you wish to evaluate=step(x+0.018575627357)*(x+0.018575627357) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_14The MATHEVAL action with label l2r_14 calculates the following quantities: Quantity | Type | Description |
l2r_14 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_14 FUNCthe function you wish to evaluate=step(x-0.244103938341)*(x-0.244103938341) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_15The MATHEVAL action with label l2r_15 calculates the following quantities: Quantity | Type | Description |
l2r_15 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_15 FUNCthe function you wish to evaluate=step(x-0.010851536877)*(x-0.010851536877) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l2r_16The MATHEVAL action with label l2r_16 calculates the following quantities: Quantity | Type | Description |
l2r_16 | scalar | an arbitrary function |
: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe values input to this function=l2_16 FUNCthe function you wish to evaluate=step(x+0.242730781436)*(x+0.242730781436) PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l3_1The COMBINE action with label l3_1 calculates the following quantities: Quantity | Type | Description |
l3_1 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l2r_1,l2r_2,l2r_3,l2r_4,l2r_5,l2r_6,l2r_7,l2r_8,l2r_9,l2r_10,l2r_11,l2r_12,l2r_13,l2r_14,l2r_15,l2r_16 COEFFICIENTS the coefficients of the arguments in your function=0.217471137643,0.061985671520,-0.137507811189,-0.300946652889,-0.169759228826,-0.487297862768,-0.071620188653,-0.138948693871,-0.015929482877,-0.500989377499,-0.539304614067,-0.092395000160,-0.141595348716,-0.014174301177,0.179260447621,-0.300809711218 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
l3_2The COMBINE action with label l3_2 calculates the following quantities: Quantity | Type | Description |
l3_2 | scalar | a linear compbination |
: COMBINECalculate a polynomial combination of a set of other variables. More details ARGthe values input to this function=l2r_1,l2r_2,l2r_3,l2r_4,l2r_5,l2r_6,l2r_7,l2r_8,l2r_9,l2r_10,l2r_11,l2r_12,l2r_13,l2r_14,l2r_15,l2r_16 COEFFICIENTS the coefficients of the arguments in your function=-0.173246860504,0.166358783841,0.651149749756,0.446520268917,-0.264477759600,0.516910076141,-0.123338446021,0.118029162288,-0.147078007460,0.763183176517,0.196999400854,0.096711866558,-0.223770141602,0.079359188676,-0.011950477026,0.778764307499 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
METADUsed to performed metadynamics on one or more collective variables. This action has hidden defaults. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=metadThe METAD action with label metad calculates the following quantities: Quantity | Type | Description |
metad.bias | scalar | the instantaneous value of the bias potential |
metad.rbias | scalar | the instantaneous value of the bias normalized using the c(t) reweighting factor [rbias=bias-rct].This component can be used to obtain a reweighted histogram. |
metad.rct | scalar | the reweighting factor c(t). |
ARGthe labels of the scalars on which the bias will act=l3_1,l3_2 SIGMAthe widths of the Gaussian hills=0.12,0.16 HEIGHTthe heights of the Gaussian hills=1.5 BIASFACTORuse well tempered metadynamics and use this bias factor=10 TEMPthe system temperature - this is only needed if you are doing well-tempered metadynamics=400.0 PACEthe frequency for hill addition=1000
GRID_MINthe lower bounds for the grid=-17,-19 GRID_MAXthe upper bounds for the grid=11,19
CALC_RCT calculate the c(t) reweighting factor and use that to obtain the normalized bias [rbias=bias-rct]
... METAD
METADUsed to performed metadynamics on one or more collective variables. This action uses the defaults shown here. More details ...
LABELa label for the action so that its output can be referenced in the input to other actions=metad
ARGthe labels of the scalars on which the bias will act=l3_1,l3_2 SIGMAthe widths of the Gaussian hills=0.12,0.16 HEIGHTthe heights of the Gaussian hills=1.5 BIASFACTORuse well tempered metadynamics and use this bias factor=10 TEMPthe system temperature - this is only needed if you are doing well-tempered metadynamics=400.0 PACEthe frequency for hill addition=1000
GRID_MINthe lower bounds for the grid=-17,-19 GRID_MAXthe upper bounds for the grid=11,19
CALC_RCT calculate the c(t) reweighting factor and use that to obtain the normalized bias [rbias=bias-rct]
FILE a file in which the list of added hills is stored=HILLS
... METAD
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=phi_1 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=phi_1
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=psi_1 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=psi_1
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=phi_2 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=phi_2
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=psi_2 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=psi_2
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=phi_3 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=phi_3
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=psi_3 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=psi_3
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=phi_4 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=phi_4
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=psi_4 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=psi_4
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=phi_5 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=phi_5
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=psi_5 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=psi_5
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=phi_6 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=phi_6
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=psi_6 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=psi_6
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=phi_7 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=phi_7
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=psi_7 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=psi_7
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=phi_8 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=phi_8
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=psi_8 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=psi_8
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=phi_9 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=phi_9
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=psi_9 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=psi_9
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=l3_1 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=l3_1
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=l3_2 STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=l3_2
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=metad.bias STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=metad_bias
PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=metad.rbias STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=metad_rbias