Project ID: plumID:22.004
Stderr for source: input_files/Aldol_reaction/2_Sampling/plumed.dat
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Contacts.PcPnsj.cpp: In static member function ‘static void PLMD::colvar::Contacts::registerKeywords(PLMD::Keywords&)’:
Contacts.PcPnsj.cpp:77:26: warning: ‘void PLMD::Keywords::addOutputComponent(const std::string&, const std::string&, const std::string&)’ is deprecated: Use addOutputComponent with four argument and specify valid types for value from scalar/vector/matrix/grid [-Wdeprecated-declarations]
77 | keys.addOutputComponent("c", "default", "contacts");
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/runner/opt/include/plumed_master/core/Action.h:27,
from /home/runner/opt/include/plumed_master/core/ActionAtomistic.h:25,
from /home/runner/opt/include/plumed_master/core/Colvar.h:25,
from Contacts.PcPnsj.cpp:22:
/home/runner/opt/include/plumed_master/core/../tools/Keywords.h:178:8: note: declared here
178 | void addOutputComponent( const std::string& name, const std::string& key, const std::string& descr );
| ^~~~~~~~~~~~~~~~~~
Contacts.PcPnsj.cpp: In constructor ‘PLMD::colvar::Contacts::Contacts(const PLMD::ActionOptions&)’:
Contacts.PcPnsj.cpp:93:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
93 | for(unsigned int i=0; i<num_atomsa; i++)
| ~^~~~~~~~~~~
Contacts.PcPnsj.cpp:99:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
99 | for(unsigned int i=0; i<num_atomsb; i++)
| ~^~~~~~~~~~~
Contacts.PcPnsj.cpp:124:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
124 | for(unsigned int i=0;i<num_atomsa;++i){
| ~^~~~~~~~~~~
Contacts.PcPnsj.cpp:129:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
129 | for(unsigned int i=0;i<num_atomsb;++i){
| ~^~~~~~~~~~~
terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError'
what():
(tools/Keywords.cpp:221) void PLMD::Keywords::addFlag(const std::string&, bool, const std::string&)
+++ assertion failed: !def
the second argument to addFlag must be false COMPONENTS
[fv-az1112-493:08769] *** Process received signal ***
[fv-az1112-493:08769] Signal: Aborted (6)
[fv-az1112-493:08769] Signal code: (-6)
[fv-az1112-493:08769] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f392b845320]
[fv-az1112-493:08769] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f392b89eb1c]
[fv-az1112-493:08769] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f392b84526e]
[fv-az1112-493:08769] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f392b8288ff]
[fv-az1112-493:08769] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5ff5)[0x7f392bca5ff5]
[fv-az1112-493:08769] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xbb0da)[0x7f392bcbb0da]
[fv-az1112-493:08769] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt10unexpectedv+0x0)[0x7f392bca5a55]
[fv-az1112-493:08769] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5a6f)[0x7f392bca5a6f]
[fv-az1112-493:08769] [ 8] plumed_master(+0x146dd)[0x55f0f25006dd]
[fv-az1112-493:08769] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f392b82a1ca]
[fv-az1112-493:08769] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f392b82a28b]
[fv-az1112-493:08769] [11] plumed_master(+0x15365)[0x55f0f2501365]
[fv-az1112-493:08769] *** End of error message ***