Project ID: plumID:22.004
Stderr for source: input_files/Aldol_reaction/2_Sampling/plumed.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above Contacts.461L0l.cpp: In constructor ‘PLMD::colvar::Contacts::Contacts(const PLMD::ActionOptions&)’: Contacts.461L0l.cpp:93:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 93 | for(unsigned int i=0; i<num_atomsa; i++) | ~^~~~~~~~~~~ Contacts.461L0l.cpp:99:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 99 | for(unsigned int i=0; i<num_atomsb; i++) | ~^~~~~~~~~~~ Contacts.461L0l.cpp:124:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 124 | for(unsigned int i=0;i<num_atomsa;++i){ | ~^~~~~~~~~~~ Contacts.461L0l.cpp:129:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 129 | for(unsigned int i=0;i<num_atomsb;++i){ | ~^~~~~~~~~~~ terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (tools/Keywords.cpp:263) void PLMD::Keywords::addFlag(const std::string&, bool, const std::string&) +++ assertion failed: !def the second argument to addFlag must be false COMPONENTS [fv-az2207-588:37422] *** Process received signal *** [fv-az2207-588:37422] Signal: Aborted (6) [fv-az2207-588:37422] Signal code: (-6) [fv-az2207-588:37422] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f2147045330] [fv-az2207-588:37422] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f214709eb2c] [fv-az2207-588:37422] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f214704527e] [fv-az2207-588:37422] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f21470288ff] [fv-az2207-588:37422] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5ff5)[0x7f21474a5ff5] [fv-az2207-588:37422] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xbb0da)[0x7f21474bb0da] [fv-az2207-588:37422] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt10unexpectedv+0x0)[0x7f21474a5a55] [fv-az2207-588:37422] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5a6f)[0x7f21474a5a6f] [fv-az2207-588:37422] [ 8] plumed(+0x146dd)[0x55c70839c6dd] [fv-az2207-588:37422] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f214702a1ca] [fv-az2207-588:37422] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f214702a28b] [fv-az2207-588:37422] [11] plumed(+0x15365)[0x55c70839d365] [fv-az2207-588:37422] *** End of error message ***