Project ID: plumID:22.002
Stderr for source: OAMe-G6/plumed.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">> WARNING: "core/Atoms.h" does not exist anymore in version >=2.10, you should change your code. GAMBES_log.d2PE1D.cpp: In member function ‘virtual void PLMD::bias::GAMBESL::prepare()’: GAMBES_log.d2PE1D.cpp:226:37: warning: ‘void PLMD::PlumedMain::DeprecatedAtoms::setCollectEnergy(bool) const’ is deprecated [-Wdeprecated-declarations] 226 | plumed.getAtoms().setCollectEnergy(true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from GAMBES_log.d2PE1D.cpp:22: /home/runner/opt/include/plumed/core/PlumedMain.h:110:10: note: declared here 110 | void setCollectEnergy(bool b) const; | ^~~~~~~~~~~~~~~~ GAMBES_log.d2PE1D.cpp: In member function ‘virtual void PLMD::bias::GAMBESL::calculate()’: GAMBES_log.d2PE1D.cpp:232:36: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getKbT() const’ is deprecated: Use Action::getkBT() N.B. this function also reads the TEMP keyword from the input for you. [-Wdeprecated-declarations] 232 | beta = 1/plumed.getAtoms().getKbT(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/runner/opt/include/plumed/core/PlumedMain.h:104:12: note: declared here 104 | double getKbT() const ; | ^~~~~~ GAMBES_log.d2PE1D.cpp:233:63: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getKBoltzmann() const’ is deprecated: Use Action::getKBoltzmann(). [-Wdeprecated-declarations] 233 | if(temp>0.0){ beta = 1/(temp*plumed.getAtoms().getKBoltzmann()) ; } | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/runner/opt/include/plumed/core/PlumedMain.h:102:12: note: declared here 102 | double getKBoltzmann() const ; | ^~~~~~~~~~~~~ GAMBES_log.d2PE1D.cpp:252:57: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getEnergy() const’ is deprecated [-Wdeprecated-declarations] 252 | if(iter==0){energy_offset= plumed.getAtoms().getEnergy();} | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/runner/opt/include/plumed/core/PlumedMain.h:112:12: note: declared here 112 | double getEnergy() const ; | ^~~~~~~~~ GAMBES_log.d2PE1D.cpp:253:44: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getEnergy() const’ is deprecated [-Wdeprecated-declarations] 253 | double energy=plumed.getAtoms().getEnergy() - energy_offset; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/runner/opt/include/plumed/core/PlumedMain.h:112:12: note: declared here 112 | double getEnergy() const ; | ^~~~~~~~~