Project ID: plumID:22.002
Stderr for source: OAMe-G4/plumed.dat
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WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">>
WARNING: "core/Atoms.h" does not exist anymore in version >=2.10, you should change your code.
GAMBES_log.BV0p0Q.cpp: In member function ‘virtual void PLMD::bias::GAMBESL::prepare()’:
GAMBES_log.BV0p0Q.cpp:226:37: warning: ‘void PLMD::PlumedMain::DeprecatedAtoms::setCollectEnergy(bool) const’ is deprecated [-Wdeprecated-declarations]
226 | plumed.getAtoms().setCollectEnergy(true);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
In file included from GAMBES_log.BV0p0Q.cpp:22:
/home/runner/opt/include/plumed/core/PlumedMain.h:110:10: note: declared here
110 | void setCollectEnergy(bool b) const;
| ^~~~~~~~~~~~~~~~
GAMBES_log.BV0p0Q.cpp: In member function ‘virtual void PLMD::bias::GAMBESL::calculate()’:
GAMBES_log.BV0p0Q.cpp:232:36: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getKbT() const’ is deprecated: Use Action::getkBT() N.B. this function also reads the TEMP keyword from the input for you. [-Wdeprecated-declarations]
232 | beta = 1/plumed.getAtoms().getKbT();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/runner/opt/include/plumed/core/PlumedMain.h:104:12: note: declared here
104 | double getKbT() const ;
| ^~~~~~
GAMBES_log.BV0p0Q.cpp:233:63: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getKBoltzmann() const’ is deprecated: Use Action::getKBoltzmann(). [-Wdeprecated-declarations]
233 | if(temp>0.0){ beta = 1/(temp*plumed.getAtoms().getKBoltzmann()) ; }
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/runner/opt/include/plumed/core/PlumedMain.h:102:12: note: declared here
102 | double getKBoltzmann() const ;
| ^~~~~~~~~~~~~
GAMBES_log.BV0p0Q.cpp:252:57: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getEnergy() const’ is deprecated [-Wdeprecated-declarations]
252 | if(iter==0){energy_offset= plumed.getAtoms().getEnergy();}
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/runner/opt/include/plumed/core/PlumedMain.h:112:12: note: declared here
112 | double getEnergy() const ;
| ^~~~~~~~~
GAMBES_log.BV0p0Q.cpp:253:44: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getEnergy() const’ is deprecated [-Wdeprecated-declarations]
253 | double energy=plumed.getAtoms().getEnergy() - energy_offset;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/runner/opt/include/plumed/core/PlumedMain.h:112:12: note: declared here
112 | double getEnergy() const ;
| ^~~~~~~~~
terminate called after throwing an instance of 'PLMD::Plumed::add_buffer_to<std::bad_alloc>'
what(): std::bad_alloc
[runnervmg1sw1:66128] *** Process received signal ***
[runnervmg1sw1:66128] Signal: Aborted (6)
[runnervmg1sw1:66128] Signal code: (-6)
[runnervmg1sw1:66128] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f1482c45330]
[runnervmg1sw1:66128] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f1482c9eb2c]
[runnervmg1sw1:66128] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f1482c4527e]
[runnervmg1sw1:66128] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f1482c288ff]
[runnervmg1sw1:66128] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5ff5)[0x7f14830a5ff5]
[runnervmg1sw1:66128] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xbb0da)[0x7f14830bb0da]
[runnervmg1sw1:66128] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt10unexpectedv+0x0)[0x7f14830a5a55]
[runnervmg1sw1:66128] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5a6f)[0x7f14830a5a6f]
[runnervmg1sw1:66128] [ 8] plumed(+0x146dd)[0x56227b5c86dd]
[runnervmg1sw1:66128] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f1482c2a1ca]
[runnervmg1sw1:66128] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f1482c2a28b]
[runnervmg1sw1:66128] [11] plumed(+0x15365)[0x56227b5c9365]
[runnervmg1sw1:66128] *** End of error message ***