Project ID: plumID:22.002
Stderr for source: OAMe-G3/plumed.dat
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WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">>
WARNING: "core/Atoms.h" does not exist anymore in  version >=2.10, you should change your code.
GAMBES_log_static_few.IuoBDg.cpp: In member function ‘virtual void PLMD::bias::GAMBESL::prepare()’:
GAMBES_log_static_few.IuoBDg.cpp:232:37: warning: ‘void PLMD::PlumedMain::DeprecatedAtoms::setCollectEnergy(bool) const’ is deprecated [-Wdeprecated-declarations]
232 |   plumed.getAtoms().setCollectEnergy(true);
|   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
In file included from GAMBES_log_static_few.IuoBDg.cpp:22:
/home/runner/opt/include/plumed_master/core/PlumedMain.h:110:10: note: declared here
110 |     void setCollectEnergy(bool b) const;
|          ^~~~~~~~~~~~~~~~
GAMBES_log_static_few.IuoBDg.cpp: In member function ‘virtual void PLMD::bias::GAMBESL::calculate()’:
GAMBES_log_static_few.IuoBDg.cpp:238:36: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getKbT() const’ is deprecated: Use Action::getkBT() N.B. this function also reads the TEMP keyword from the input for you. [-Wdeprecated-declarations]
238 |   beta = 1/plumed.getAtoms().getKbT();
|            ~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from GAMBES_log_static_few.IuoBDg.cpp:22:
/home/runner/opt/include/plumed_master/core/PlumedMain.h:104:12: note: declared here
104 |     double getKbT() const ;
|            ^~~~~~
GAMBES_log_static_few.IuoBDg.cpp:239:63: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getKBoltzmann() const’ is deprecated: Use Action::getKBoltzmann(). [-Wdeprecated-declarations]
239 |   if(temp>0.0){ beta = 1/(temp*plumed.getAtoms().getKBoltzmann()) ; }
|                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from GAMBES_log_static_few.IuoBDg.cpp:22:
/home/runner/opt/include/plumed_master/core/PlumedMain.h:102:12: note: declared here
102 |     double getKBoltzmann() const ;
|            ^~~~~~~~~~~~~
GAMBES_log_static_few.IuoBDg.cpp:258:57: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getEnergy() const’ is deprecated [-Wdeprecated-declarations]
258 |   if(iter==0){energy_offset= plumed.getAtoms().getEnergy();}
|                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from GAMBES_log_static_few.IuoBDg.cpp:22:
/home/runner/opt/include/plumed_master/core/PlumedMain.h:112:12: note: declared here
112 |     double getEnergy() const ;
|            ^~~~~~~~~
GAMBES_log_static_few.IuoBDg.cpp:259:44: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getEnergy() const’ is deprecated [-Wdeprecated-declarations]
259 |   double energy=plumed.getAtoms().getEnergy() - energy_offset;
|                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from GAMBES_log_static_few.IuoBDg.cpp:22:
/home/runner/opt/include/plumed_master/core/PlumedMain.h:112:12: note: declared here
112 |     double getEnergy() const ;
|            ^~~~~~~~~