Project ID: plumID:22.002
Stderr for source: OAMe-G3/plumed.dat
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WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">>
WARNING: "core/Atoms.h" does not exist anymore in version >=2.10, you should change your code.
GAMBES_log_static_few.IhsFwG.cpp: In member function ‘virtual void PLMD::bias::GAMBESL::prepare()’:
GAMBES_log_static_few.IhsFwG.cpp:232:37: warning: ‘void PLMD::PlumedMain::DeprecatedAtoms::setCollectEnergy(bool) const’ is deprecated [-Wdeprecated-declarations]
232 | plumed.getAtoms().setCollectEnergy(true);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
In file included from GAMBES_log_static_few.IhsFwG.cpp:22:
/home/runner/opt/include/plumed/core/PlumedMain.h:110:10: note: declared here
110 | void setCollectEnergy(bool b) const;
| ^~~~~~~~~~~~~~~~
GAMBES_log_static_few.IhsFwG.cpp: In member function ‘virtual void PLMD::bias::GAMBESL::calculate()’:
GAMBES_log_static_few.IhsFwG.cpp:238:36: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getKbT() const’ is deprecated: Use Action::getkBT() N.B. this function also reads the TEMP keyword from the input for you. [-Wdeprecated-declarations]
238 | beta = 1/plumed.getAtoms().getKbT();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/runner/opt/include/plumed/core/PlumedMain.h:104:12: note: declared here
104 | double getKbT() const ;
| ^~~~~~
GAMBES_log_static_few.IhsFwG.cpp:239:63: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getKBoltzmann() const’ is deprecated: Use Action::getKBoltzmann(). [-Wdeprecated-declarations]
239 | if(temp>0.0){ beta = 1/(temp*plumed.getAtoms().getKBoltzmann()) ; }
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/runner/opt/include/plumed/core/PlumedMain.h:102:12: note: declared here
102 | double getKBoltzmann() const ;
| ^~~~~~~~~~~~~
GAMBES_log_static_few.IhsFwG.cpp:258:57: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getEnergy() const’ is deprecated [-Wdeprecated-declarations]
258 | if(iter==0){energy_offset= plumed.getAtoms().getEnergy();}
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/runner/opt/include/plumed/core/PlumedMain.h:112:12: note: declared here
112 | double getEnergy() const ;
| ^~~~~~~~~
GAMBES_log_static_few.IhsFwG.cpp:259:44: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getEnergy() const’ is deprecated [-Wdeprecated-declarations]
259 | double energy=plumed.getAtoms().getEnergy() - energy_offset;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/runner/opt/include/plumed/core/PlumedMain.h:112:12: note: declared here
112 | double getEnergy() const ;
| ^~~~~~~~~
terminate called after throwing an instance of 'PLMD::Plumed::add_buffer_to<std::bad_alloc>'
what(): std::bad_alloc
[runnervmgx7h7:07706] *** Process received signal ***
[runnervmgx7h7:07706] Signal: Aborted (6)
[runnervmgx7h7:07706] Signal code: (-6)
[runnervmgx7h7:07706] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f67f4e45330]
[runnervmgx7h7:07706] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f67f4e9ec0c]
[runnervmgx7h7:07706] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f67f4e4527e]
[runnervmgx7h7:07706] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f67f4e288ff]
[runnervmgx7h7:07706] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5ff5)[0x7f67f52a5ff5]
[runnervmgx7h7:07706] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xbb0da)[0x7f67f52bb0da]
[runnervmgx7h7:07706] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt10unexpectedv+0x0)[0x7f67f52a5a55]
[runnervmgx7h7:07706] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5a6f)[0x7f67f52a5a6f]
[runnervmgx7h7:07706] [ 8] plumed(+0x146dd)[0x55935449f6dd]
[runnervmgx7h7:07706] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f67f4e2a1ca]
[runnervmgx7h7:07706] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f67f4e2a28b]
[runnervmgx7h7:07706] [11] plumed(+0x15365)[0x5593544a0365]
[runnervmgx7h7:07706] *** End of error message ***