Project ID: plumID:22.002
Stderr for source: OAH-G4/plumed.dat
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#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">> WARNING: "core/Atoms.h" does not exist anymore in version >=2.10, you should change your code. GAMBES_log_static_few.R1TIyc.cpp: In static member function ‘static void PLMD::bias::GAMBESL::registerKeywords(PLMD::Keywords&)’: GAMBES_log_static_few.R1TIyc.cpp:100:26: warning: ‘void PLMD::Keywords::addOutputComponent(const std::string&, const std::string&, const std::string&)’ is deprecated: Use addOutputComponent with four argument and specify valid types for value from scalar/vector/matrix/grid [-Wdeprecated-declarations] 100 | keys.addOutputComponent("_factors","default","two or more weighing factors for bias" | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 | "these quantities will named with the gaussian number followed by " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 | "the character string _factors. These quantities tell the user the value of the factor "); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/runner/opt/include/plumed_master/core/Action.h:27, from /home/runner/opt/include/plumed_master/core/ActionWithValue.h:25, from GAMBES_log_static_few.R1TIyc.cpp:23: /home/runner/opt/include/plumed_master/core/../tools/Keywords.h:254:8: note: declared here 254 | void addOutputComponent( const std::string& name, const std::string& key, const std::string& descr ); | ^~~~~~~~~~~~~~~~~~ GAMBES_log_static_few.R1TIyc.cpp:103:26: warning: ‘void PLMD::Keywords::addOutputComponent(const std::string&, const std::string&, const std::string&)’ is deprecated: Use addOutputComponent with four argument and specify valid types for value from scalar/vector/matrix/grid [-Wdeprecated-declarations] 103 | keys.addOutputComponent("_averages","AVERAGES","two or more the averages"); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/runner/opt/include/plumed_master/core/../tools/Keywords.h:254:8: note: declared here 254 | void addOutputComponent( const std::string& name, const std::string& key, const std::string& descr ); | ^~~~~~~~~~~~~~~~~~ GAMBES_log_static_few.R1TIyc.cpp: In member function ‘virtual void PLMD::bias::GAMBESL::prepare()’: GAMBES_log_static_few.R1TIyc.cpp:232:37: warning: ‘void PLMD::PlumedMain::DeprecatedAtoms::setCollectEnergy(bool) const’ is deprecated [-Wdeprecated-declarations] 232 | plumed.getAtoms().setCollectEnergy(true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from GAMBES_log_static_few.R1TIyc.cpp:22: /home/runner/opt/include/plumed_master/core/PlumedMain.h:110:10: note: declared here 110 | void setCollectEnergy(bool b) const; | ^~~~~~~~~~~~~~~~ GAMBES_log_static_few.R1TIyc.cpp: In member function ‘virtual void PLMD::bias::GAMBESL::calculate()’: GAMBES_log_static_few.R1TIyc.cpp:238:36: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getKbT() const’ is deprecated: Use Action::getkBT() N.B. this function also reads the TEMP keyword from the input for you. [-Wdeprecated-declarations] 238 | beta = 1/plumed.getAtoms().getKbT(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/runner/opt/include/plumed_master/core/PlumedMain.h:104:12: note: declared here 104 | double getKbT() const ; | ^~~~~~ GAMBES_log_static_few.R1TIyc.cpp:239:63: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getKBoltzmann() const’ is deprecated: Use Action::getKBoltzmann(). [-Wdeprecated-declarations] 239 | if(temp>0.0){ beta = 1/(temp*plumed.getAtoms().getKBoltzmann()) ; } | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/runner/opt/include/plumed_master/core/PlumedMain.h:102:12: note: declared here 102 | double getKBoltzmann() const ; | ^~~~~~~~~~~~~ GAMBES_log_static_few.R1TIyc.cpp:258:57: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getEnergy() const’ is deprecated [-Wdeprecated-declarations] 258 | if(iter==0){energy_offset= plumed.getAtoms().getEnergy();} | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/runner/opt/include/plumed_master/core/PlumedMain.h:112:12: note: declared here 112 | double getEnergy() const ; | ^~~~~~~~~ GAMBES_log_static_few.R1TIyc.cpp:259:44: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getEnergy() const’ is deprecated [-Wdeprecated-declarations] 259 | double energy=plumed.getAtoms().getEnergy() - energy_offset; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/runner/opt/include/plumed_master/core/PlumedMain.h:112:12: note: declared here 112 | double getEnergy() const ; | ^~~~~~~~~ terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (tools/Keywords.cpp:385) void PLMD::Keywords::use(std::string_view) +++ assertion failed: reserved(k) the ARG keyword is not reserved [fv-az1934-628:61672] *** Process received signal *** [fv-az1934-628:61672] Signal: Aborted (6) [fv-az1934-628:61672] Signal code: (-6) [fv-az1934-628:61672] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f673d645320] [fv-az1934-628:61672] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f673d69eb1c] [fv-az1934-628:61672] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f673d64526e] [fv-az1934-628:61672] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f673d6288ff] [fv-az1934-628:61672] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5ff5)[0x7f673daa5ff5] [fv-az1934-628:61672] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xbb0da)[0x7f673dabb0da] [fv-az1934-628:61672] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt10unexpectedv+0x0)[0x7f673daa5a55] [fv-az1934-628:61672] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5a6f)[0x7f673daa5a6f] [fv-az1934-628:61672] [ 8] plumed_master(+0x146dd)[0x55da8c6bb6dd] [fv-az1934-628:61672] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f673d62a1ca] [fv-az1934-628:61672] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f673d62a28b] [fv-az1934-628:61672] [11] plumed_master(+0x15365)[0x55da8c6bc365] [fv-az1934-628:61672] *** End of error message ***