**Project ID:** plumID:21.049

**Source:** 2ad_inter/plumed.0.dat

**Originally used with PLUMED version:** 2.6

**Stable:** zipped raw stdout - zipped raw stderr - stderr

**Master:** zipped raw stdout - zipped raw stderr - stderr

LOADLoads a library, possibly defining new actions. More detailsFILE=../PathCV.cppfile to be loadedUNITSThis command sets the internal units for the code. More detailsLENGTH=Athe units of lengthsTIME=psthe units of timeENERGY=kcal/molthe units of energyphi:TORSIONCalculate a torsional angle. More detailsATOMS=5,7,9,15the four atoms involved in the torsional anglewphi:COMBINECalculate a polynomial combination of a set of other variables. More detailsARG=the input to this functionphiCOEFFICIENTS=1the coefficients of the arguments in your functionPERIODIC=NOif the output of your function is periodic then you should specify the periodicity of the functionLOWER_WALLSDefines a wall for the value of one or more collective variables, More detailsARG=the arguments on which the bias is actingwphiAT=-2.7the positions of the wallKAPPA=1000.0the force constant for the wallEXP=2the powers for the wallsEPS=1the values for s_i in the expression for a wallOFFSET=0the offset for the start of the wallLABEL=a label for the action so that its output can be referenced in the input to other actionsphilwallUPPER_WALLSDefines a wall for the value of one or more collective variables, More detailsARG=the arguments on which the bias is actingwphiAT=2.7the positions of the wallKAPPA=1000.0the force constant for the wallEXP=2the powers for the wallsEPS=1the values for s_i in the expression for a wallOFFSET=0the offset for the start of the wallLABEL=a label for the action so that its output can be referenced in the input to other actionsphiuwallpsi:TORSIONCalculate a torsional angle. More detailsATOMS=7,9,15,17the four atoms involved in the torsional anglewpsi:COMBINECalculate a polynomial combination of a set of other variables. More detailsARG=the input to this functionpsiCOEFFICIENTS=1the coefficients of the arguments in your functionPERIODIC=NOif the output of your function is periodic then you should specify the periodicity of the functionLOWER_WALLSDefines a wall for the value of one or more collective variables, More detailsARG=the arguments on which the bias is actingwpsiAT=-2.7the positions of the wallKAPPA=1000.0the force constant for the wallEXP=2the powers for the wallsEPS=1the values for s_i in the expression for a wallOFFSET=0the offset for the start of the wallLABEL=a label for the action so that its output can be referenced in the input to other actionspsilwallUPPER_WALLSDefines a wall for the value of one or more collective variables, More detailsARG=the arguments on which the bias is actingwpsiAT=2.7the positions of the wallKAPPA=1000.0the force constant for the wallEXP=2the powers for the wallsEPS=1the values for s_i in the expression for a wallOFFSET=0the offset for the start of the wallLABEL=a label for the action so that its output can be referenced in the input to other actionspsiuwallPATHCVLABEL=This action is not part of PLUMED and was included by using a LOAD command More detailspcvARG=phi,psiGENPATH=20,20,20,-1.4,1.2,1.1,-0.8 FIXED=21,40 HALFLIFE=1000 PACE=250 WALKERS_RSTRIDE=250 WALKERS_ID=0 WALKERS_N=4 WALKERS_DIR OUTFILE=1_PATHUPPER_WALLSDefines a wall for the value of one or more collective variables, More detailsARG=the arguments on which the bias is actingpcv.zAT=0.0the positions of the wallKAPPA=70.0the force constant for the wallEXP=2the powers for the wallsEPS=1the values for s_i in the expression for a wallOFFSET=0the offset for the start of the wallLABEL=a label for the action so that its output can be referenced in the input to other actionstubeLOWER_WALLSDefines a wall for the value of one or more collective variables, More detailsARG=the arguments on which the bias is actingpcv.sAT=-0.4the positions of the wallKAPPA=50.0the force constant for the wallEXP=2the powers for the wallsEPS=1the values for s_i in the expression for a wallOFFSET=0the offset for the start of the wallLABEL=a label for the action so that its output can be referenced in the input to other actionslwallUPPER_WALLSDefines a wall for the value of one or more collective variables, More detailsARG=the arguments on which the bias is actingpcv.sAT=1.4the positions of the wallKAPPA=50.0the force constant for the wallEXP=2the powers for the wallsEPS=1the values for s_i in the expression for a wallOFFSET=0the offset for the start of the wallLABEL=a label for the action so that its output can be referenced in the input to other actionsuwallMETADUsed to performed metadynamics on one or more collective variables. More detailsLABEL=a label for the action so that its output can be referenced in the input to other actionsmetadARG=the input for this action is the scalar output from one or more other actionspcv.sHEIGHT=0.02the heights of the Gaussian hillsSIGMA=0.05the widths of the Gaussian hillsINTERVAL=-0.4,1.4one dimensional lower and upper limits, outside the limits the system will not feel the biasing forceGRID_MIN=-1.0the lower bounds for the gridGRID_MAX=2.0the upper bounds for the gridPACE=250the frequency for hill additionWALKERS_RSTRIDE=250stride for reading hills filesWALKERS_ID=0walker idWALKERS_N=3number of walkersWALKERS_DIRshared directory with the hills files from all the walkersFILE=1_HILLSa file in which the list of added hills is storedPrint quantities to a file. More detailsSTRIDE=10the frequency with which the quantities of interest should be outputARG=the input for this action is the scalar output from one or more other actionsphi,psi,pcv.s,pcv.z,metad.bias,tube.bias,philwall.bias,phiuwall.bias,psilwall.bias,psiuwall.bias,lwall.bias,uwall.biasFILE=./1_COLVARthe name of the file on which to output these quantities