Project ID: plumID:21.035
Stderr for source: CmuMD-NaCl/flat-plumed.dat
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WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">>
Cmumd.02oXww.cpp: In member function ‘virtual void PLMD::colvar::CmuMD::calculate()’:
Cmumd.02oXww.cpp:290:14: error: invalid use of incomplete type ‘class PLMD::Communicator’
290 |       stride=comm.Get_size();  //Number of processes
|              ^~~~
In file included from /home/runner/opt/include/plumed_master/colvar/../core/../tools/OFile.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/../tools/Log.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Action.h:30,
from /home/runner/opt/include/plumed_master/colvar/../core/ActionAtomistic.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Colvar.h:25,
from /home/runner/opt/include/plumed_master/colvar/Colvar.h:24,
from Cmumd.02oXww.cpp:22:
/home/runner/opt/include/plumed_master/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’
29 | class Communicator;
|       ^~~~~~~~~~~~
Cmumd.02oXww.cpp:291:12: error: invalid use of incomplete type ‘class PLMD::Communicator’
291 |       rank=comm.Get_rank(); //Rank of present process
|            ^~~~
In file included from /home/runner/opt/include/plumed_master/colvar/../core/../tools/OFile.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/../tools/Log.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Action.h:30,
from /home/runner/opt/include/plumed_master/colvar/../core/ActionAtomistic.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Colvar.h:25,
from /home/runner/opt/include/plumed_master/colvar/Colvar.h:24,
from Cmumd.02oXww.cpp:22:
/home/runner/opt/include/plumed_master/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’
29 | class Communicator;
|       ^~~~~~~~~~~~
Cmumd.02oXww.cpp:392:7: error: invalid use of incomplete type ‘class PLMD::Communicator’
392 |       comm.Sum(histz);
|       ^~~~
In file included from /home/runner/opt/include/plumed_master/colvar/../core/../tools/OFile.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/../tools/Log.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Action.h:30,
from /home/runner/opt/include/plumed_master/colvar/../core/ActionAtomistic.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Colvar.h:25,
from /home/runner/opt/include/plumed_master/colvar/Colvar.h:24,
from Cmumd.02oXww.cpp:22:
/home/runner/opt/include/plumed_master/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’
29 | class Communicator;
|       ^~~~~~~~~~~~
Cmumd.02oXww.cpp:393:7: error: invalid use of incomplete type ‘class PLMD::Communicator’
393 |       comm.Sum(com_solv);
|       ^~~~
In file included from /home/runner/opt/include/plumed_master/colvar/../core/../tools/OFile.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/../tools/Log.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Action.h:30,
from /home/runner/opt/include/plumed_master/colvar/../core/ActionAtomistic.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Colvar.h:25,
from /home/runner/opt/include/plumed_master/colvar/Colvar.h:24,
from Cmumd.02oXww.cpp:22:
/home/runner/opt/include/plumed_master/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’
29 | class Communicator;
|       ^~~~~~~~~~~~
Cmumd.02oXww.cpp:644:7: error: invalid use of incomplete type ‘class PLMD::Communicator’
644 |       comm.Sum(deriv);
|       ^~~~
In file included from /home/runner/opt/include/plumed_master/colvar/../core/../tools/OFile.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/../tools/Log.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Action.h:30,
from /home/runner/opt/include/plumed_master/colvar/../core/ActionAtomistic.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Colvar.h:25,
from /home/runner/opt/include/plumed_master/colvar/Colvar.h:24,
from Cmumd.02oXww.cpp:22:
/home/runner/opt/include/plumed_master/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’
29 | class Communicator;
|       ^~~~~~~~~~~~
Cmumd.02oXww.cpp:645:7: error: invalid use of incomplete type ‘class PLMD::Communicator’
645 |       comm.Sum(n_CR);
|       ^~~~
In file included from /home/runner/opt/include/plumed_master/colvar/../core/../tools/OFile.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/../tools/Log.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Action.h:30,
from /home/runner/opt/include/plumed_master/colvar/../core/ActionAtomistic.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Colvar.h:25,
from /home/runner/opt/include/plumed_master/colvar/Colvar.h:24,
from Cmumd.02oXww.cpp:22:
/home/runner/opt/include/plumed_master/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’
29 | class Communicator;
|       ^~~~~~~~~~~~
Cmumd.02oXww.cpp:646:7: error: invalid use of incomplete type ‘class PLMD::Communicator’
646 |       comm.Sum(virial);
|       ^~~~
In file included from /home/runner/opt/include/plumed_master/colvar/../core/../tools/OFile.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/../tools/Log.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Action.h:30,
from /home/runner/opt/include/plumed_master/colvar/../core/ActionAtomistic.h:25,
from /home/runner/opt/include/plumed_master/colvar/../core/Colvar.h:25,
from /home/runner/opt/include/plumed_master/colvar/Colvar.h:24,
from Cmumd.02oXww.cpp:22:
/home/runner/opt/include/plumed_master/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’
29 | class Communicator;
|       ^~~~~~~~~~~~
terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError'
what():
(core/PlumedMain.cpp:1260) void PLMD::PlumedMain::load(const string&)
An error happened while executing command env PLUMED_ROOT="/home/runner/opt/lib/plumed_master" env PLUMED_VERSION="2.10.0-dev" env PLUMED_HTMLDIR="/home/runner/opt/share/doc/plumed_master" env PLUMED_INCLUDEDIR="/home/runner/opt/include" env PLUMED_PROGRAM_NAME="plumed_master" env PLUMED_IS_INSTALLED="yes" "/home/runner/opt/lib/plumed_master"/scripts/mklib.sh Cmumd.cpp

[fv-az985-228:70006] *** Process received signal ***
[fv-az985-228:70006] Signal: Aborted (6)
[fv-az985-228:70006] Signal code:  (-6)
[fv-az985-228:70006] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f4678e42520]
[fv-az985-228:70006] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f4678e969fc]
[fv-az985-228:70006] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f4678e42476]
[fv-az985-228:70006] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f4678e287f3]
[fv-az985-228:70006] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa4f26)[0x7f46792a4f26]
[fv-az985-228:70006] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xb6d9c)[0x7f46792b6d9c]
[fv-az985-228:70006] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xb6e07)[0x7f46792b6e07]
[fv-az985-228:70006] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f46792b70bb]
[fv-az985-228:70006] [ 8] plumed_master(+0x12e7f)[0x55965194de7f]
[fv-az985-228:70006] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f4678e29d90]
[fv-az985-228:70006] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f4678e29e40]
[fv-az985-228:70006] [11] plumed_master(+0x13115)[0x55965194e115]
[fv-az985-228:70006] *** End of error message ***