Project ID: plumID:21.035
Stderr for source: CmuMD-NaCl/flat-plumed.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">> Cmumd.wpibQd.cpp: In member function ‘virtual void PLMD::colvar::CmuMD::calculate()’: Cmumd.wpibQd.cpp:290:14: error: invalid use of incomplete type ‘class PLMD::Communicator’ 290 | stride=comm.Get_size(); //Number of processes | ^~~~ In file included from /home/runner/opt/include/plumed/colvar/../core/../tools/OFile.h:25, from /home/runner/opt/include/plumed/colvar/../core/../tools/Log.h:25, from /home/runner/opt/include/plumed/colvar/../core/Action.h:30, from /home/runner/opt/include/plumed/colvar/../core/ActionAtomistic.h:25, from /home/runner/opt/include/plumed/colvar/../core/Colvar.h:25, from /home/runner/opt/include/plumed/colvar/Colvar.h:24, from Cmumd.wpibQd.cpp:22: /home/runner/opt/include/plumed/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’ 29 | class Communicator; | ^~~~~~~~~~~~ Cmumd.wpibQd.cpp:291:12: error: invalid use of incomplete type ‘class PLMD::Communicator’ 291 | rank=comm.Get_rank(); //Rank of present process | ^~~~ /home/runner/opt/include/plumed/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’ 29 | class Communicator; | ^~~~~~~~~~~~ Cmumd.wpibQd.cpp:392:7: error: invalid use of incomplete type ‘class PLMD::Communicator’ 392 | comm.Sum(histz); | ^~~~ /home/runner/opt/include/plumed/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’ 29 | class Communicator; | ^~~~~~~~~~~~ Cmumd.wpibQd.cpp:393:7: error: invalid use of incomplete type ‘class PLMD::Communicator’ 393 | comm.Sum(com_solv); | ^~~~ /home/runner/opt/include/plumed/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’ 29 | class Communicator; | ^~~~~~~~~~~~ Cmumd.wpibQd.cpp:644:7: error: invalid use of incomplete type ‘class PLMD::Communicator’ 644 | comm.Sum(deriv); | ^~~~ /home/runner/opt/include/plumed/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’ 29 | class Communicator; | ^~~~~~~~~~~~ Cmumd.wpibQd.cpp:645:7: error: invalid use of incomplete type ‘class PLMD::Communicator’ 645 | comm.Sum(n_CR); | ^~~~ /home/runner/opt/include/plumed/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’ 29 | class Communicator; | ^~~~~~~~~~~~ Cmumd.wpibQd.cpp:646:7: error: invalid use of incomplete type ‘class PLMD::Communicator’ 646 | comm.Sum(virial); | ^~~~ /home/runner/opt/include/plumed/colvar/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’ 29 | class Communicator; | ^~~~~~~~~~~~ terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (core/PlumedMain.cpp:1502) void PLMD::PlumedMain::load(const std::string&) An error happened while executing command env PLUMED_ROOT='/home/runner/opt/lib/plumed' PLUMED_VERSION='2.10b' PLUMED_HTMLDIR='/home/runner/opt/share/doc/plumed' PLUMED_INCLUDEDIR='/home/runner/opt/include' PLUMED_PROGRAM_NAME='plumed' PLUMED_IS_INSTALLED='yes' "/home/runner/opt/lib/plumed"/scripts/mklib.sh -n -o ./Cmumd.2.10b.so Cmumd.cpp [fv-az1441-587:37571] *** Process received signal *** [fv-az1441-587:37571] Signal: Aborted (6) [fv-az1441-587:37571] Signal code: (-6) [fv-az1441-587:37571] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f1926a45330] [fv-az1441-587:37571] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f1926a9eb2c] [fv-az1441-587:37571] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f1926a4527e] [fv-az1441-587:37571] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f1926a288ff] [fv-az1441-587:37571] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5ff5)[0x7f1926ea5ff5] [fv-az1441-587:37571] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xbb0da)[0x7f1926ebb0da] [fv-az1441-587:37571] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt10unexpectedv+0x0)[0x7f1926ea5a55] [fv-az1441-587:37571] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5a6f)[0x7f1926ea5a6f] [fv-az1441-587:37571] [ 8] plumed(+0x146dd)[0x557605a376dd] [fv-az1441-587:37571] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f1926a2a1ca] [fv-az1441-587:37571] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f1926a2a28b] [fv-az1441-587:37571] [11] plumed(+0x15365)[0x557605a38365] [fv-az1441-587:37571] *** End of error message ***