Project ID: plumID:21.033
Stderr for source: inside_path/plumed.3.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">> WARNING: "core/Atoms.h" does not exist anymore in version >=2.10, you should change your code. ../PathCV.r36jBA.cpp: In static member function ‘static void PLMD::function::PathCV::registerKeywords(PLMD::Keywords&)’: ../PathCV.r36jBA.cpp:198:3: error: ‘componentsAreNotOptional’ was not declared in this scope 198 | componentsAreNotOptional(keys); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../PathCV.r36jBA.cpp: In destructor ‘virtual PLMD::function::PathCV::~PathCV()’: ../PathCV.r36jBA.cpp:208:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 208 | for(int i=0;i<mw_n_;++i){ | ~^~~~~~ ../PathCV.r36jBA.cpp: In constructor ‘PLMD::function::PathCV::PathCV(const PLMD::ActionOptions&)’: ../PathCV.r36jBA.cpp:236:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 236 | for(int i=0;i<mw_n_;++i){ | ~^~~~~~ ../PathCV.r36jBA.cpp:259:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 259 | if(i==mw_id_) ifiles[i]->close(); | ~^~~~~~~~ ../PathCV.r36jBA.cpp: In member function ‘void PLMD::function::PathCV::generatePath()’: ../PathCV.r36jBA.cpp:483:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 483 | for(int inode=0;inode<nnodes;inode++){ | ~~~~~^~~~~~~ ../PathCV.r36jBA.cpp: In member function ‘void PLMD::function::PathCV::readMultipleWalkers()’: ../PathCV.r36jBA.cpp:941:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 941 | for(int i=0;i<mw_n_;++i){ | ~^~~~~~ ../PathCV.r36jBA.cpp:942:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 942 | if(i==mw_id_) continue; | ~^~~~~~~~ ../PathCV.r36jBA.cpp:957:5: error: invalid use of incomplete type ‘class PLMD::Communicator’ 957 | comm.Barrier(); | ^~~~ In file included from /home/runner/opt/include/plumed/function/../core/../tools/OFile.h:25, from /home/runner/opt/include/plumed/function/../core/../tools/Log.h:25, from /home/runner/opt/include/plumed/function/../core/Action.h:30, from /home/runner/opt/include/plumed/function/../core/ActionWithValue.h:25, from /home/runner/opt/include/plumed/function/Function.h:25, from ../PathCV.r36jBA.cpp:22: /home/runner/opt/include/plumed/function/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’ 29 | class Communicator; | ^~~~~~~~~~~~ ../PathCV.r36jBA.cpp:958:5: error: invalid use of incomplete type ‘class PLMD::Communicator’ 958 | multi_sim_comm.Barrier(); | ^~~~~~~~~~~~~~ /home/runner/opt/include/plumed/function/../core/../tools/FileBase.h:29:7: note: forward declaration of ‘class PLMD::Communicator’ 29 | class Communicator; | ^~~~~~~~~~~~ terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (core/PlumedMain.cpp:1292) void PLMD::PlumedMain::load(const std::string&) An error happened while executing command env PLUMED_ROOT='/home/runner/opt/lib/plumed' PLUMED_VERSION='2.10b' PLUMED_HTMLDIR='/home/runner/opt/share/doc/plumed' PLUMED_INCLUDEDIR='/home/runner/opt/include' PLUMED_PROGRAM_NAME='plumed' PLUMED_IS_INSTALLED='yes' "/home/runner/opt/lib/plumed"/scripts/mklib.sh -n -o ./../PathCV.2.10b.so ../PathCV.cpp [fv-az788-895:08323] *** Process received signal *** [fv-az788-895:08323] Signal: Aborted (6) [fv-az788-895:08323] Signal code: (-6) [fv-az788-895:08323] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f19a0045320] [fv-az788-895:08323] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f19a009eb1c] [fv-az788-895:08323] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f19a004526e] [fv-az788-895:08323] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f19a00288ff] [fv-az788-895:08323] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5ff5)[0x7f19a04a5ff5] [fv-az788-895:08323] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xbb0da)[0x7f19a04bb0da] [fv-az788-895:08323] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt10unexpectedv+0x0)[0x7f19a04a5a55] [fv-az788-895:08323] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5a6f)[0x7f19a04a5a6f] [fv-az788-895:08323] [ 8] plumed(+0x146dd)[0x56359f9ce6dd] [fv-az788-895:08323] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f19a002a1ca] [fv-az788-895:08323] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f19a002a28b] [fv-az788-895:08323] [11] plumed(+0x15365)[0x56359f9cf365] [fv-az788-895:08323] *** End of error message ***