Project ID: plumID:21.015
Source: MetaD/CBM5/post_processing/coordination-groups.dat
Originally used with PLUMED version: 2.5
Stable: zipped raw stdout - zipped raw stderr - stderr
Master: zipped raw stdout - zipped raw stderr - stderr
RESTARTActivate restart. More details WHOLEMOLECULESThis action is used to rebuild molecules that can become split by the periodic boundary conditions. More details ENTITY0the atoms that make up a molecule that you wish to align=721-887 C1: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=721-722 R_0The r_0 parameter of the switching function=0.3 C2: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=723-724 R_0The r_0 parameter of the switching function=0.3 C3: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=725-726 R_0The r_0 parameter of the switching function=0.3 C4: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=727-728 R_0The r_0 parameter of the switching function=0.3 C5: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=729-729 R_0The r_0 parameter of the switching function=0.3 C6: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=730-731 R_0The r_0 parameter of the switching function=0.3 C7: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=732-733 R_0The r_0 parameter of the switching function=0.3 C8: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=734-735 R_0The r_0 parameter of the switching function=0.3 C9: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=736-737 R_0The r_0 parameter of the switching function=0.3 C10: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=738-743 R_0The r_0 parameter of the switching function=0.3 C11: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=744-745 R_0The r_0 parameter of the switching function=0.3 C12: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=746-746 R_0The r_0 parameter of the switching function=0.3 C13: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=747-748 R_0The r_0 parameter of the switching function=0.3 C14: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=749-750 R_0The r_0 parameter of the switching function=0.3 C15: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=751-752 R_0The r_0 parameter of the switching function=0.3 C16: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=753-757 R_0The r_0 parameter of the switching function=0.3 C17: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=758-759 R_0The r_0 parameter of the switching function=0.3 C18: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=760-761 R_0The r_0 parameter of the switching function=0.3 C19: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=762-763 R_0The r_0 parameter of the switching function=0.3 C20: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=764-765 R_0The r_0 parameter of the switching function=0.3 C21: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=766-767 R_0The r_0 parameter of the switching function=0.3 C22: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=768-769 R_0The r_0 parameter of the switching function=0.3 C23: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=770-772 R_0The r_0 parameter of the switching function=0.3 C24: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=773-776 R_0The r_0 parameter of the switching function=0.3 C25: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=777-778 R_0The r_0 parameter of the switching function=0.3 C26: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=779-780 R_0The r_0 parameter of the switching function=0.3 C27: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=781-783 R_0The r_0 parameter of the switching function=0.3 C28: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=784-786 R_0The r_0 parameter of the switching function=0.3 C29: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=787-791 R_0The r_0 parameter of the switching function=0.3 C30: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=792-793 R_0The r_0 parameter of the switching function=0.3 C31: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=794-794 R_0The r_0 parameter of the switching function=0.3 C32: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=795-796 R_0The r_0 parameter of the switching function=0.3 C33: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=797-801 R_0The r_0 parameter of the switching function=0.3 C34: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=802-807 R_0The r_0 parameter of the switching function=0.3 C35: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=808-809 R_0The r_0 parameter of the switching function=0.3 C36: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=810-811 R_0The r_0 parameter of the switching function=0.3 C37: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=812-813 R_0The r_0 parameter of the switching function=0.3 C38: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=814-815 R_0The r_0 parameter of the switching function=0.3 C39: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=816-817 R_0The r_0 parameter of the switching function=0.3 C40: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=818-819 R_0The r_0 parameter of the switching function=0.3 C41: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=820-821 R_0The r_0 parameter of the switching function=0.3 C42: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=822-823 R_0The r_0 parameter of the switching function=0.3 C43: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=824-825 R_0The r_0 parameter of the switching function=0.3 C44: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=826-827 R_0The r_0 parameter of the switching function=0.3 C45: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=828-828 R_0The r_0 parameter of the switching function=0.3 C46: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=829-830 R_0The r_0 parameter of the switching function=0.3 C47: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=831-835 R_0The r_0 parameter of the switching function=0.3 C48: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=836-836 R_0The r_0 parameter of the switching function=0.3 C49: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=837-838 R_0The r_0 parameter of the switching function=0.3 C50: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=839-844 R_0The r_0 parameter of the switching function=0.3 C51: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=845-846 R_0The r_0 parameter of the switching function=0.3 C52: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=847-848 R_0The r_0 parameter of the switching function=0.3 C53: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=849-850 R_0The r_0 parameter of the switching function=0.3 C54: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=851-851 R_0The r_0 parameter of the switching function=0.3 C55: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=852-853 R_0The r_0 parameter of the switching function=0.3 C56: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=854-855 R_0The r_0 parameter of the switching function=0.3 C57: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=856-857 R_0The r_0 parameter of the switching function=0.3 C58: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=858-859 R_0The r_0 parameter of the switching function=0.3 C59: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=860-861 R_0The r_0 parameter of the switching function=0.3 C60: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=862-862 R_0The r_0 parameter of the switching function=0.3 C61: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=863-863 R_0The r_0 parameter of the switching function=0.3 C62: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=864-867 R_0The r_0 parameter of the switching function=0.3 C63: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=868-871 R_0The r_0 parameter of the switching function=0.3 C64: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=872-875 R_0The r_0 parameter of the switching function=0.3 C65: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=876-879 R_0The r_0 parameter of the switching function=0.3 C66: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=880-883 R_0The r_0 parameter of the switching function=0.3 C67: COORDINATIONCalculate coordination numbers. More details GROUPAFirst list of atoms=1-720 GROUPBSecond list of atoms (if empty, N*(N-1)/2 pairs in GROUPA are counted)=884-887 R_0The r_0 parameter of the switching function=0.3 PRINTPrint quantities to a file. More details ARGthe labels of the values that you would like to print to the file=* STRIDE the frequency with which the quantities of interest should be output=1 FILEthe name of the file on which to output these quantities=COORDINATION RESTARTallows per-action setting of restart (YES/NO/AUTO)=NO