Project ID: plumID:21.005
Stderr for source: SF-prof/plumed_structure_factor_OO.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below
#! To inspect the full error file, please download the zipped raw stderr file above
WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">>
../codes/StructureFactor_sphericallyAveraged.fDH63s.cpp: In constructor ‘PLMD::colvar::StructureFactor_sphericallyAveraged::StructureFactor_sphericallyAveraged(const PLMD::ActionOptions&)’:
../codes/StructureFactor_sphericallyAveraged.fDH63s.cpp:184:41: warning: ‘int PLMD::PlumedMain::DeprecatedAtoms::getNatoms() const’ is deprecated [-Wdeprecated-declarations]
184 | NumAtom_=plumed.getAtoms().getNatoms();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../codes/StructureFactor_sphericallyAveraged.fDH63s.cpp:8:
/home/runner/opt/include/plumed/core/PlumedMain.h:107:9: note: declared here
107 | int getNatoms() const ;
| ^~~~~~~~~
../codes/StructureFactor_sphericallyAveraged.fDH63s.cpp:190:108: warning: ‘int PLMD::PlumedMain::DeprecatedAtoms::getNatoms() const’ is deprecated [-Wdeprecated-declarations]
190 | log.printf(" over a total of N_tot=%d, considering a number of atoms N=%d\n",plumed.getAtoms().getNatoms(),NumAtom_);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/runner/opt/include/plumed/core/PlumedMain.h:107:9: note: declared here
107 | int getNatoms() const ;
| ^~~~~~~~~
Assembler messages:
Fatal error: can't create plumed_mklib.l5LwnX/../codes/StructureFactor_sphericallyAveraged.o: No such file or directory
ERROR : in input for command line tool driver :
(core/PlumedMain.cpp:1500) void PLMD::PlumedMain::load(const std::string&)
An error happened while executing command env PLUMED_ROOT='/home/runner/opt/lib/plumed' PLUMED_VERSION='2.10.2' PLUMED_HTMLDIR='/home/runner/opt/share/doc/plumed' PLUMED_INCLUDEDIR='/home/runner/opt/include' PLUMED_PROGRAM_NAME='plumed' PLUMED_IS_INSTALLED='yes' "/home/runner/opt/lib/plumed"/scripts/mklib.sh -n -o ./../codes/StructureFactor_sphericallyAveraged.2.10.2.so ../codes/StructureFactor_sphericallyAveraged.cpp