Project ID: plumID:20.016
Stderr for source: Naphthalene/plumed.dat
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PairOrientationalEntropy.cpp: In constructor ‘PLMD::colvar::PairOrientationalEntropy::PairOrientationalEntropy(const PLMD::ActionOptions&)’:
PairOrientationalEntropy.cpp:193:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  193 |     for(unsigned int i=0;i<nhist_[0];i++) {
PairOrientationalEntropy.cpp:194:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  194 |        for(unsigned int j=0;j<nhist_[1];j++) {
PairOrientationalEntropy.cpp:252:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  252 |   for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropy.cpp:256:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  256 |   for(unsigned i=0;i<nhist_[1];++i){
PairOrientationalEntropy.cpp: In member function ‘virtual void PLMD::colvar::PairOrientationalEntropy::calculate()’:
PairOrientationalEntropy.cpp:511:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  511 |      for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropy.cpp:512:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  512 |         for(unsigned j=0;j<nhist_[1];++j){
PairOrientationalEntropy.cpp:523:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  523 |   for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropy.cpp:524:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  524 |      for(unsigned j=0;j<nhist_[1];++j){
PairOrientationalEntropy.cpp:562:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  562 |       for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropy.cpp:563:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  563 |         for(unsigned j=0;j<nhist_[1];++j){
PairOrientationalEntropy.cpp:581:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  581 |     for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropy.cpp:582:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  582 |        for(unsigned j=0;j<nhist_[1];++j){
PairOrientationalEntropy.cpp:593:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  593 |     for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropy.cpp:594:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  594 |        for(unsigned j=0;j<nhist_[1];++j){
PairOrientationalEntropy.cpp: In member function ‘double PLMD::colvar::PairOrientationalEntropy::integrate(PLMD::Matrix, std::vector) const’:
PairOrientationalEntropy.cpp:626:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  626 |   for(unsigned i=1;i<(nhist_[0]-1);++i){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropy.cpp:627:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  627 |      for(unsigned j=1;j<(nhist_[1]-1);++j){
      |                       ~^~~~~~~~~~~~~~
PairOrientationalEntropy.cpp:632:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  632 |   for(unsigned i=1;i<(nhist_[0]-1);++i){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropy.cpp:636:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  636 |   for(unsigned j=1;j<(nhist_[1]-1);++j){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropy.cpp: In member function ‘PLMD::Vector PLMD::colvar::PairOrientationalEntropy::integrate(PLMD::Matrix<PLMD::VectorGeneric<3> >, std::vector) const’:
PairOrientationalEntropy.cpp:653:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  653 |   for(unsigned i=1;i<(nhist_[0]-1);++i){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropy.cpp:654:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  654 |      for(unsigned j=1;j<(nhist_[1]-1);++j){
      |                       ~^~~~~~~~~~~~~~
PairOrientationalEntropy.cpp:659:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  659 |   for(unsigned i=1;i<(nhist_[0]-1);++i){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropy.cpp:663:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  663 |   for(unsigned j=1;j<(nhist_[1]-1);++j){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropy.cpp: In member function ‘PLMD::Tensor PLMD::colvar::PairOrientationalEntropy::integrate(PLMD::Matrix<PLMD::TensorGeneric<3, 3> >, std::vector) const’:
PairOrientationalEntropy.cpp:680:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  680 |   for(unsigned i=1;i<(nhist_[0]-1);++i){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropy.cpp:681:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  681 |      for(unsigned j=1;j<(nhist_[1]-1);++j){
      |                       ~^~~~~~~~~~~~~~
PairOrientationalEntropy.cpp:686:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  686 |   for(unsigned i=1;i<(nhist_[0]-1);++i){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropy.cpp:690:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  690 |   for(unsigned j=1;j<(nhist_[1]-1);++j){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropy.cpp: In member function ‘void PLMD::colvar::PairOrientationalEntropy::outputGofr(PLMD::Matrix, const char*)’:
PairOrientationalEntropy.cpp:705:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  705 |   for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropy.cpp:706:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  706 |      for(unsigned j=0;j<nhist_[1];++j){
PairOrientationalEntropyPerpendicular.cpp: In constructor ‘PLMD::colvar::PairOrientationalEntropyPerpendicular::PairOrientationalEntropyPerpendicular(const PLMD::ActionOptions&)’:
PairOrientationalEntropyPerpendicular.cpp:199:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  199 |     for(unsigned int i=0;i<nhist_[0];i++) {
PairOrientationalEntropyPerpendicular.cpp:200:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  200 |        for(unsigned int j=0;j<nhist_[1];j++) {
PairOrientationalEntropyPerpendicular.cpp:259:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  259 |   for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropyPerpendicular.cpp:263:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  263 |   for(unsigned i=0;i<nhist_[1];++i){
PairOrientationalEntropyPerpendicular.cpp: In member function ‘virtual void PLMD::colvar::PairOrientationalEntropyPerpendicular::calculate()’:
PairOrientationalEntropyPerpendicular.cpp:600:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  600 |      for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropyPerpendicular.cpp:601:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  601 |         for(unsigned j=0;j<nhist_[1];++j){
PairOrientationalEntropyPerpendicular.cpp:612:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  612 |   for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropyPerpendicular.cpp:613:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  613 |      for(unsigned j=0;j<nhist_[1];++j){
PairOrientationalEntropyPerpendicular.cpp:655:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  655 |       for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropyPerpendicular.cpp:656:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  656 |         for(unsigned j=0;j<nhist_[1];++j){
PairOrientationalEntropyPerpendicular.cpp:678:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  678 |     for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropyPerpendicular.cpp:679:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  679 |        for(unsigned j=0;j<nhist_[1];++j){
PairOrientationalEntropyPerpendicular.cpp:690:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  690 |     for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropyPerpendicular.cpp:691:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  691 |        for(unsigned j=0;j<nhist_[1];++j){
PairOrientationalEntropyPerpendicular.cpp: In member function ‘double PLMD::colvar::PairOrientationalEntropyPerpendicular::integrate(PLMD::Matrix, std::vector) const’:
PairOrientationalEntropyPerpendicular.cpp:723:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  723 |   for(unsigned i=1;i<(nhist_[0]-1);++i){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropyPerpendicular.cpp:724:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  724 |      for(unsigned j=1;j<(nhist_[1]-1);++j){
      |                       ~^~~~~~~~~~~~~~
PairOrientationalEntropyPerpendicular.cpp:729:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  729 |   for(unsigned i=1;i<(nhist_[0]-1);++i){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropyPerpendicular.cpp:733:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  733 |   for(unsigned j=1;j<(nhist_[1]-1);++j){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropyPerpendicular.cpp: In member function ‘PLMD::Vector PLMD::colvar::PairOrientationalEntropyPerpendicular::integrate(PLMD::Matrix<PLMD::VectorGeneric<3> >, std::vector) const’:
PairOrientationalEntropyPerpendicular.cpp:750:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  750 |   for(unsigned i=1;i<(nhist_[0]-1);++i){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropyPerpendicular.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  751 |      for(unsigned j=1;j<(nhist_[1]-1);++j){
      |                       ~^~~~~~~~~~~~~~
PairOrientationalEntropyPerpendicular.cpp:756:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  756 |   for(unsigned i=1;i<(nhist_[0]-1);++i){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropyPerpendicular.cpp:760:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  760 |   for(unsigned j=1;j<(nhist_[1]-1);++j){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropyPerpendicular.cpp: In member function ‘PLMD::Tensor PLMD::colvar::PairOrientationalEntropyPerpendicular::integrate(PLMD::Matrix<PLMD::TensorGeneric<3, 3> >, std::vector) const’:
PairOrientationalEntropyPerpendicular.cpp:777:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  777 |   for(unsigned i=1;i<(nhist_[0]-1);++i){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropyPerpendicular.cpp:778:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  778 |      for(unsigned j=1;j<(nhist_[1]-1);++j){
      |                       ~^~~~~~~~~~~~~~
PairOrientationalEntropyPerpendicular.cpp:783:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  783 |   for(unsigned i=1;i<(nhist_[0]-1);++i){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropyPerpendicular.cpp:787:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  787 |   for(unsigned j=1;j<(nhist_[1]-1);++j){
      |                    ~^~~~~~~~~~~~~~
PairOrientationalEntropyPerpendicular.cpp: In member function ‘void PLMD::colvar::PairOrientationalEntropyPerpendicular::outputGofr(PLMD::Matrix, const char*)’:
PairOrientationalEntropyPerpendicular.cpp:802:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  802 |   for(unsigned i=0;i<nhist_[0];++i){
PairOrientationalEntropyPerpendicular.cpp:803:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  803 |      for(unsigned j=0;j<nhist_[1];++j){
terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError'
  what():  
+++ PLUMED error
+++ at Action.cpp:243, function void PLMD::Action::error(const string&) const
+++ message follows +++
ERROR in input to action METAD with label metad : restart file HILLS not found
[fv-az37-639:97051] *** Process received signal ***
[fv-az37-639:97051] Signal: Aborted (6)
[fv-az37-639:97051] Signal code:  (-6)
[fv-az37-639:97051] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x46210)[0x7fed80cf4210]
[fv-az37-639:97051] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fed80cf418b]
[fv-az37-639:97051] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fed80cd3859]
[fv-az37-639:97051] [ 3] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e911)[0x7fed80f5b911]
[fv-az37-639:97051] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa38c)[0x7fed80f6738c]
[fv-az37-639:97051] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa3f7)[0x7fed80f673f7]
[fv-az37-639:97051] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4d)[0x7fed80f676fd]
[fv-az37-639:97051] [ 7] plumed(+0xf5c9)[0x561b937635c9]
[fv-az37-639:97051] [ 8] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fed80cd50b3]
[fv-az37-639:97051] [ 9] plumed(+0xf84e)[0x561b9376384e]
[fv-az37-639:97051] *** End of error message ***
</pre>