PLUMED-NEST

Project ID: plumID:20.015
Stderr for source: 2-EMMI/plumed.dat
Download: zipped raw stdout - zipped raw stderr

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WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">>
EMMIVox.KPoxDq.cpp: In static member function ‘static void PLMD::isdb::EMMIVOX::registerKeywords(PLMD::Keywords&)’:
EMMIVox.KPoxDq.cpp:242:3: error: ‘componentsAreNotOptional’ was not declared in this scope
242 |   componentsAreNotOptional(keys);
|   ^~~~~~~~~~~~~~~~~~~~~~~~
EMMIVox.KPoxDq.cpp: In constructor ‘PLMD::isdb::EMMIVOX::EMMIVOX(const PLMD::ActionOptions&)’:
EMMIVox.KPoxDq.cpp:328:52: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getKBoltzmann() const’ is deprecated: Use Action::getKBoltzmann(). [-Wdeprecated-declarations]
328 |   if(temp>0.0) kbt_=plumed.getAtoms().getKBoltzmann()*temp;
|                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from EMMIVox.KPoxDq.cpp:24:
/home/runner/opt/include/plumed/core/PlumedMain.h:103:12: note: declared here
103 |     double getKBoltzmann() const ;
|            ^~~~~~~~~~~~~
EMMIVox.KPoxDq.cpp:329:37: warning: ‘double PLMD::PlumedMain::DeprecatedAtoms::getKbT() const’ is deprecated: Use Action::getkBT() N.B. this function also reads the TEMP keyword from the input for you. [-Wdeprecated-declarations]
329 |   else kbt_=plumed.getAtoms().getKbT();
|             ~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/runner/opt/include/plumed/core/PlumedMain.h:105:12: note: declared here
105 |     double getKbT() const ;
|            ^~~~~~
EMMIVox.KPoxDq.cpp: In member function ‘void PLMD::isdb::EMMIVOX::write_model_overlap(long int)’:
EMMIVox.KPoxDq.cpp:536:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
536 |   for(int i=0; i<ovmd_.size(); ++i) {
|                ~^~~~~~~~~~~~~
EMMIVox.KPoxDq.cpp: In member function ‘std::vector PLMD::isdb::EMMIVOX::read_exp_errors(std::string)’:
EMMIVox.KPoxDq.cpp:670:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
670 |       for(unsigned i=0; i<nexp; ++i) {
|                         ~^~~~~
EMMIVox.KPoxDq.cpp: In member function ‘void PLMD::isdb::EMMIVOX::get_exp_data(std::string)’:
EMMIVox.KPoxDq.cpp:801:22: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} and ‘std::vector<std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
801 |     if(GMM_d_beta_[i]>=GMM_d_grps_.size()) error("Check Beta values");
ERROR : in input for command line tool driver :
(core/PlumedMain.cpp:1500) void PLMD::PlumedMain::load(const std::string&)
An error happened while executing command env PLUMED_ROOT='/home/runner/opt/lib/plumed' PLUMED_VERSION='2.10.2' PLUMED_HTMLDIR='/home/runner/opt/share/doc/plumed' PLUMED_INCLUDEDIR='/home/runner/opt/include' PLUMED_PROGRAM_NAME='plumed' PLUMED_IS_INSTALLED='yes' "/home/runner/opt/lib/plumed"/scripts/mklib.sh -n -o ./EMMIVox.2.10.2.so EMMIVox.cpp

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