Project ID: plumID:20.004
Stderr for source: aldol/3_enhanced_sampling/plumed.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above Contacts.snF0vX.cpp: In constructor ‘PLMD::colvar::Contacts::Contacts(const PLMD::ActionOptions&)’: Contacts.snF0vX.cpp:93:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 93 | for(unsigned int i=0; i<num_atomsa; i++) | ~^~~~~~~~~~~ Contacts.snF0vX.cpp:99:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 99 | for(unsigned int i=0; i<num_atomsb; i++) | ~^~~~~~~~~~~ Contacts.snF0vX.cpp:124:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 124 | for(unsigned int i=0;i<num_atomsa;++i){ | ~^~~~~~~~~~~ Contacts.snF0vX.cpp:129:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 129 | for(unsigned int i=0;i<num_atomsb;++i){ | ~^~~~~~~~~~~ terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (tools/Keywords.cpp:263) void PLMD::Keywords::addFlag(const std::string&, bool, const std::string&) +++ assertion failed: !def the second argument to addFlag must be false COMPONENTS [pkrvmbietmlfzoi:11371] *** Process received signal *** [pkrvmbietmlfzoi:11371] Signal: Aborted (6) [pkrvmbietmlfzoi:11371] Signal code: (-6) [pkrvmbietmlfzoi:11371] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7fe259a45330] [pkrvmbietmlfzoi:11371] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7fe259a9eb2c] [pkrvmbietmlfzoi:11371] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7fe259a4527e] [pkrvmbietmlfzoi:11371] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7fe259a288ff] [pkrvmbietmlfzoi:11371] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5ff5)[0x7fe259ea5ff5] [pkrvmbietmlfzoi:11371] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xbb0da)[0x7fe259ebb0da] [pkrvmbietmlfzoi:11371] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt10unexpectedv+0x0)[0x7fe259ea5a55] [pkrvmbietmlfzoi:11371] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5a6f)[0x7fe259ea5a6f] [pkrvmbietmlfzoi:11371] [ 8] plumed(+0x146dd)[0x55c716e586dd] [pkrvmbietmlfzoi:11371] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7fe259a2a1ca] [pkrvmbietmlfzoi:11371] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7fe259a2a28b] [pkrvmbietmlfzoi:11371] [11] plumed(+0x15365)[0x55c716e59365] [pkrvmbietmlfzoi:11371] *** End of error message ***