Project ID: plumID:20.004
Stderr for source: aldol/3_enhanced_sampling/plumed.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above Contacts.cpp: In constructor ‘PLMD::colvar::Contacts::Contacts(const PLMD::ActionOptions&)’: Contacts.cpp:93:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 93 | for(unsigned int i=0; i<num_atomsa; i++) | ~^~~~~~~~~~~ Contacts.cpp:99:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 99 | for(unsigned int i=0; i<num_atomsb; i++) | ~^~~~~~~~~~~ Contacts.cpp:124:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 124 | for(unsigned int i=0;i<num_atomsa;++i){ | ~^~~~~~~~~~~ Contacts.cpp:129:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 129 | for(unsigned int i=0;i<num_atomsb;++i){ | ~^~~~~~~~~~~ terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (tools/Keywords.cpp:210) void PLMD::Keywords::addFlag(const string&, bool, const string&) +++ assertion failed: !def the second argument to addFlag must be false COMPONENTS [fv-az659-796:10354] *** Process received signal *** [fv-az659-796:10354] Signal: Aborted (6) [fv-az659-796:10354] Signal code: (-6) [fv-az659-796:10354] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f1a85842520] [fv-az659-796:10354] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f1a858969fc] [fv-az659-796:10354] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f1a85842476] [fv-az659-796:10354] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f1a858287f3] [fv-az659-796:10354] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa4f26)[0x7f1a85ca4f26] [fv-az659-796:10354] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xb6d9c)[0x7f1a85cb6d9c] [fv-az659-796:10354] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xb6e07)[0x7f1a85cb6e07] [fv-az659-796:10354] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f1a85cb70bb] [fv-az659-796:10354] [ 8] plumed(+0x12f48)[0x55d9b9d12f48] [fv-az659-796:10354] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f1a85829d90] [fv-az659-796:10354] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f1a85829e40] [fv-az659-796:10354] [11] plumed(+0x131e5)[0x55d9b9d131e5] [fv-az659-796:10354] *** End of error message ***