Project ID: plumID:19.065
Source: iter_10pc[-0.75,-0.35].dat
Originally used with PLUMED version: 2.5
Stable: zipped raw stdout - zipped raw stderr - stderr
Master: zipped raw stdout - zipped raw stderr - stderr

Click on the labels of the actions for more information on what each action computes
```com_1: COMCalculate the center of mass for a group of atoms. More details ATOMSthe list of atoms which are involved the virtual atom's definition=2,5,7,9,15,17,19
p_com: POSITIONCalculate the components of the position of an atom. More details ATOMthe atom number=com_1
p_0: POSITIONCalculate the components of the position of an atom. More details ATOMthe atom number=2
p_1: POSITIONCalculate the components of the position of an atom. More details ATOMthe atom number=5
p_2: POSITIONCalculate the components of the position of an atom. More details ATOMthe atom number=7
p_3: POSITIONCalculate the components of the position of an atom. More details ATOMthe atom number=9
p_4: POSITIONCalculate the components of the position of an atom. More details ATOMthe atom number=15
p_5: POSITIONCalculate the components of the position of an atom. More details ATOMthe atom number=17
p_6: POSITIONCalculate the components of the position of an atom. More details ATOMthe atom number=19
l_0_out_0: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_0.x,p_com.x
l_0_out_1: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_0.y,p_com.y
l_0_out_2: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_0.z,p_com.z
l_0_out_3: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_1.x,p_com.x
l_0_out_4: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_1.y,p_com.y
l_0_out_5: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_1.z,p_com.z
l_0_out_6: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_2.x,p_com.x
l_0_out_7: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_2.y,p_com.y
l_0_out_8: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_2.z,p_com.z
l_0_out_9: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_3.x,p_com.x
l_0_out_10: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_3.y,p_com.y
l_0_out_11: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_3.z,p_com.z
l_0_out_12: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_4.x,p_com.x
l_0_out_13: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_4.y,p_com.y
l_0_out_14: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_4.z,p_com.z
l_0_out_15: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_5.x,p_com.x
l_0_out_16: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_5.y,p_com.y
l_0_out_17: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_5.z,p_com.z
l_0_out_18: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_6.x,p_com.x
l_0_out_19: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_6.y,p_com.y
l_0_out_20: COMBINECalculate a polynomial combination of a set of other variables. More details PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO COEFFICIENTS the coefficients of the arguments in your function=2.000000,-2.000000 ARGthe input to this function=p_6.z,p_com.z
ann_force: ANNCalculates the ANN-function. More details ARGthe input for this action is the scalar output from one or more other actions=l_0_out_0,l_0_out_1,l_0_out_2,l_0_out_3,l_0_out_4,l_0_out_5,l_0_out_6,l_0_out_7,l_0_out_8,l_0_out_9,l_0_out_10,l_0_out_11,l_0_out_12,l_0_out_13,l_0_out_14,l_0_out_15,l_0_out_16,l_0_out_17,l_0_out_18,l_0_out_19,l_0_out_20 NUM_LAYERSnumber of layers of the neural network=3 NUM_NODESnumbers of nodes in each layer of the neural network=21,40,2 ACTIVATIONSactivation functions for the neural network=Tanh,Tanh  WEIGHTS0flattened weight arrays connecting adjacent layers, WEIGHTS0 represents flattened weight array connecting layer 0 and layer 1, WEIGHTS1 represents flattened weight array connecting layer 1 and layer 2, 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WEIGHTS1flattened weight arrays connecting adjacent layers, WEIGHTS0 represents flattened weight array connecting layer 0 and layer 1, WEIGHTS1 represents flattened weight array connecting layer 1 and layer 2, =0.77344841,-0.29414463,-1.6978056,-0.13063663,0.39704907,1.8736819,0.72373867,2.0881131,0.18313161,0.355308,-1.916425,0.67006516,-0.92443782,-0.11423839,1.7971238,1.7798725,1.0098712,-1.7111522,-0.15189299,1.7747121,1.9996315,-0.24853724,-1.7898036,1.9107976,-2.1558392,1.3657448,0.0084374342,-0.13056301,1.795984,1.3411089,1.9075364,-0.31848818,-1.4542729,-1.775088,-0.58084404,-0.58970803,0.029906295,1.7895145,-1.7188559,1.7851392,-0.25304312,-1.6836355,0.3721332,-1.175071,-0.62329441,-0.39465141,1.4007956,-0.40331012,1.1107358,1.9117254,0.43985713,-0.14437149,-1.296436,0.24451791,-0.35389248,-0.37311333,0.49437895,0.30872315,-0.22298311,-0.38789687,-0.43545952,-1.645131,0.41830021,-0.3956145,0.46518299,-0.24318275,-0.41142401,-1.247003,-0.37899557,-0.29322559,-0.38944328,-0.93914151,0.34314537,0.37776199,-1.4658709,-0.74603903,-0.12951267,-0.37005571,0.37495339,-0.37983003  BIASES0bias array for each layer of the neural network, BIASES0 represents bias array for layer 1, BIASES1 represents bias array for layer 2, =-0.0055254959,0.78720057,0.014547006,0.80796558,-0.13996057,-0.024399251,0.93444455,-0.030929221,-0.72495371,-0.88794476,0.046587817,-0.012610422,-0.77836734,0.21859954,-0.017470572,-0.030374831,-0.19417678,0.041147519,-0.10680339,-0.034718998,-0.02578192,0.68725622,0.035567258,-0.030912522,0.028020585,0.0083604837,0.059522483,0.78927821,-0.01162482,-0.060221627,-0.031542361,0.34519917,0.05392414,0.0096205194,-0.88806677,-0.83240187,0.068880782,-0.014645247,0.049268197,-0.033397291 BIASES1bias array for each layer of the neural network, BIASES0 represents bias array for layer 1, BIASES1 represents bias array for layer 2, =0.30446702,1.768932
restraint: RESTRAINTAdds harmonic and/or linear restraints on one or more variables. More details ARGthe arguments on which the bias is acting=ann_force.node-0,ann_force.node-1 ATthe position of the restraint=-0.75,-0.35 KAPPA specifies that the restraint is harmonic and what the values of the force constants on each of the variables are=3000,3000
```