Project ID: plumID:19.040
Source: comet/sgoop/plumed.dat
Originally used with PLUMED version: 2.3
Stable: zipped raw stdout - zipped raw stderr - stderr
Master: zipped raw stdout - zipped raw stderr - stderr

Click on the labels of the actions for more information on what each action computes
```phi1: TORSIONCalculate a torsional angle. More details ATOMSthe four atoms involved in the torsional angle=5,7,9,15
psi1: TORSIONCalculate a torsional angle. More details ATOMSthe four atoms involved in the torsional angle=7,9,15,17
phi2: TORSIONCalculate a torsional angle. More details ATOMSthe four atoms involved in the torsional angle=15,17,19,25
psi2: TORSIONCalculate a torsional angle. More details ATOMSthe four atoms involved in the torsional angle=17,19,25,27
phi3: TORSIONCalculate a torsional angle. More details ATOMSthe four atoms involved in the torsional angle=25,27,29,35
psi3: TORSIONCalculate a torsional angle. More details ATOMSthe four atoms involved in the torsional angle=27,29,35,37
cosphi1: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe input to this function=phi1 FUNCthe function you wish to evaluate=0.5+cos(x-1.25 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
cospsi1: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe input to this function=psi1 FUNCthe function you wish to evaluate=0.5+cos(x-1.25 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
cosphi2: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe input to this function=phi2 FUNCthe function you wish to evaluate=0.5+cos(x-1.25 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
cospsi2: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe input to this function=psi2 FUNCthe function you wish to evaluate=0.5+cos(x-1.25 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
cosphi3: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe input to this function=phi3 FUNCthe function you wish to evaluate=0.5+cos(x-1.25 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
cospsi3: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe input to this function=psi3 FUNCthe function you wish to evaluate=0.5+cos(x-1.25 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
meta_coord: MATHEVALAn alias to the CUSTOM function that can also be used to calaculate combinations of variables using a custom expression. More details ARGthe input to this function=cosphi1,cospsi1,cosphi2,cospsi2,cosphi3,cospsi3 VARthe names to give each of the arguments in the function=c1,c2,c3,c4,c5,c6 FUNCthe function you wish to evaluate=0.62*c1+0.12*c2+0.57*c3+0.11*c4+0.51*c5+0.04*c6 PERIODICif the output of your function is periodic then you should specify the periodicity of the function=NO
metad: METADUsed to performed metadynamics on one or more collective variables. More details ARGthe input for this action is the scalar output from one or more other actions=meta_coord PACEthe frequency for hill addition=500 HEIGHTthe heights of the Gaussian hills=1.5 SIGMAthe widths of the Gaussian hills=0.1 FILE a file in which the list of added hills is stored=HILLS BIASFACTORuse well tempered metadynamics and use this bias factor=10.0 TEMPthe system temperature - this is only needed if you are doing well-tempered metadynamics=300.0
PRINTPrint quantities to a file. More details STRIDE the frequency with which the quantities of interest should be output=500 ARGthe input for this action is the scalar output from one or more other actions=phi1,psi1,phi2,psi2,phi3,psi3,meta_coord,metad.bias FILEthe name of the file on which to output these quantities=COLVAR
ENDPLUMEDTerminate plumed input. More details
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