PLUMED-NEST

Project ID: plumID:19.017
Source: plumed_reweight/reweight_rho_c.dat
Originally used with PLUMED version: 2.5
Stable: zipped raw stdout - zipped raw stderr - stderr
Master: zipped raw stdout - zipped raw stderr - stderr

Click on the labels of the actions for more information on what each action computes

rho: 
READ
Read quantities from a colvar file. More details
 
FILE
the name of the file from which to read these quantities
=../input/rtp_coord.dat 
VALUES
the values to read from the file
=rho 
IGNORE_FORCES
 use this flag if the forces added by any bias can be safely ignored
 
IGNORE_TIME
 ignore the time in the colvar file
The READ action with label rho calculates a scalar quantityc: 
READ
Read quantities from a colvar file. More details
 
FILE
the name of the file from which to read these quantities
=../input/all_coordination_45.dat 
VALUES
the values to read from the file
=c 
IGNORE_FORCES
 use this flag if the forces added by any bias can be safely ignored
 
IGNORE_TIME
 ignore the time in the colvar file
The READ action with label c calculates a scalar quantitymetad: 
READ
Read quantities from a colvar file. More details
 
FILE
the name of the file from which to read these quantities
=../input/metad_data.dat 
VALUES
the values to read from the file
=metad 
IGNORE_FORCES
 use this flag if the forces added by any bias can be safely ignored
 
IGNORE_TIME
 ignore the time in the colvar file

The READ action with label metad calculates a scalar quantityweights: 
REWEIGHT_METAD
Calculate the weights configurations should contribute to the histogram in a simulation in which a metadynamics bias acts upon the system. More details
 
TEMP
the system temperature
=300 
ARG
 the biases that must be taken into account when reweighting
=metad.rbias

The REWEIGHT_METAD action with label weights calculates a scalar quantity
HISTOGRAM
Accumulate the average probability density along a few CVs from a trajectory. More details
 ...
  
ARG
the quantity that is being averaged
=rho,c
  
GRID_MIN
 the lower bounds for the grid
=0.,0
  
GRID_MAX
 the upper bounds for the grid
=3.0,160
  
GRID_BIN
the number of bins for the grid
=100,100
  
KERNEL
 the kernel function you are using
=DISCRETE
  
LOGWEIGHTS
the logarithm of the quantity to use as the weights when calculating averages
=weights
  
LABEL
a label for the action so that its output can be referenced in the input to other actions
=hD
... HISTOGRAM

ff: 
CONVERT_TO_FES
Convert a histogram to a free energy surface. More details
 
GRID
the histogram that you would like to convert into a free energy surface (old syntax)
=hD 
TEMP
the temperature at which you are operating
=300
DUMPGRID
Output the function on the grid to a file with the PLUMED grid format. More details
 
GRID
the grid you would like to print (can also use ARG for specifying what is being printed)
=ff 
FILE
 the file on which to write the grid
=rew_fes_rhoc.dat 
STRIDE
 the frequency with which the grid should be output to the file
=5000

ENDPLUMED
Terminate plumed input. More details