Project ID: plumID:19.000
Source: sodium/plumed-ves.dat
Originally used with PLUMED version: 2.6-dev
Stable: zipped raw stdout - zipped raw stderr - stderr
Master: zipped raw stdout - zipped raw stderr - stderr
#SETTINGS NATOMS=250# vim:ft=plumedEnables syntax highlighting for PLUMED files in vim. See here for more details.LOADLoads a library, possibly defining new actions. More detailsFILE=DebyeStructureFactor.cppfile to be loadedUNITSThis command sets the internal units for the code. More detailsLENGTH=Athe units of lengths
ene:ENERGYcv:Calculate the total potential energy of the simulation box. More detailsDEBYE_STRUCTURE_FACTORCUTOFF=10.5 ACTIVE_Q=2.070595This action is not part of PLUMED and was included by using a LOAD command More detailsVES_DELTA_F...Implementation of VES Delta F method More detailsLABEL=vesa label for the action so that its output can be referenced in the input to other actionsARG=cvthe input for this action is the scalar output from one or more other actionsFILE_F0=fesA.datanames of files containing local free energies and derivativesFILE_F1=fesB.datanames of files containing local free energies and derivativesTEMP=350temperature is compulsory, but it can be sometimes fetched from the MD engineAV_STRIDE=500number of simulation steps between alpha updatesBIASFACTOR=20the gamma bias factor used for well-tempered target p(s)M_STEP=1the mu step used for the Omega functional minimizationPRINT_STRIDE=100stride for printing to ALPHA_FILEALPHA_FILE=Alpha.data ... VES_DELTA_Ffile name for output minimization parametersPrint quantities to a file. More detailsFMT=%gthe format that should be used to output real numbersSTRIDE=500the frequency with which the quantities of interest should be outputFILE=Colvar.datathe name of the file on which to output these quantitiesARG=cv.*,ene,ves.bias,ves.rctthe input for this action is the scalar output from one or more other actionsENDPLUMED-- !!bash -- --- Active shells --- awk -v n=1 -v trig=1 'BEGIN{printf "cv: DEBYE_STRUCTURE_FACTOR NOPBC ACTIVE_Q="}NR>10{der=$2-prev; if ($2>trig && der<0 && prev_der>0 && ++conta<=n) {printf val; if (conta<n) printf ","; else printf "\n"} prev=$2; prev_der=der; val=$1}' ../unb-bcc/DebyeSq.dataTerminate plumed input. More details