PLUMED-NEST-TEST-SITE

Project ID: plumID:22.012
Name: Identification of a HTT-specific binding motif in DNAJB1 essential for suppression and disaggregation of HTT
Archive: https://github.com/IsabellGrothaus/Data_repository/raw/main/Ayala_et_al_2022_PLUMED.zip
Category: bio
Keywords: contact maps, protein-protein interactions
PLUMED version: 2.6
Contributor: Isabell-Louise Grothaus
Submitted on: 17 Mar 2022
Publication: S. M. Ayala Mariscal, M. L. Pigazzini, Y. Richter, M. Özel, I. L. Grothaus, J. Protze, K. Ziege, M. Kulke, M. ElBediwi, J. V. Vermaas, L. Colombi Ciacchi, S. Köppen, F. Liu, J. Kirstein, Identification of a HTT-specific binding motif in DNAJB1 essential for suppression and disaggregation of HTT. Nature Communications. 13 (2022)

PLUMED input files

File	Compatible with
…et_al_2022_PLUMED/plumed_DNAJB1_E173A+cluster1.dat
…et_al_2022_PLUMED/plumed_DNAJB1_E173A+cluster2.dat
…et_al_2022_PLUMED/plumed_DNAJB1_E174A+cluster1.dat
…et_al_2022_PLUMED/plumed_DNAJB1_E174A+cluster2.dat
…et_al_2022_PLUMED/plumed_DNAJB1_H244A+cluster1.dat
…et_al_2022_PLUMED/plumed_DNAJB1_H244A+cluster2.dat
Ayala_et_al_2022_PLUMED/plumed_DNAJB1_H244A.dat
…la_et_al_2022_PLUMED/plumed_DNAJB1_wt+cluster1.dat
…la_et_al_2022_PLUMED/plumed_DNAJB1_wt+cluster2.dat
Ayala_et_al_2022_PLUMED/plumed_DNAJB1_wt.dat
…a_et_al_2022_PLUMED/plumed_DNAJB1_wt_distances.dat

Last tested: 22 Apr 2025, 10:11:51

Project description and instructions
Post-processing plumed files to compute distances, but mainly contact maps between protein-peptide interfaces or intra-protein contacts.

Click here to open manual pages for actions used in this project.

Submission history
[v1] 17 Mar 2022: original submission

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