Project ID: plumID:19.070
Name: Unexpected Dynamics in the UUCG RNA Tetraloop
Archive: https://github.com/sbottaro/UUCG_UNEXPECTED/raw/master/plumed_nest_uucg.zip
Category: bio
Keywords: well-tempered metadynamics, RNA, UUCG, maximum entropy
PLUMED version: 2.5
Contributor: Sandro Bottaro
Submitted on: 23 Sep 2019
Last revised: 17 Jun 2020
Publication: S. Bottaro, P. J. Nichols, B. Vögeli, M. Parrinello, K. Lindorff-Larsen, Integrating NMR and simulations reveals motions in the UUCG tetraloop. Nucleic Acids Research. 48, 5839–5848 (2020)
PLUMED input files
| File | Compatible with |
|---|---|
| plumed_nest_uucg/plumed.dat |   |
Last tested: 22 Apr 2025, 10:13:46
Project description and instructions
Simulations have been carried out with GROMACS 2016.4 and PLUMED 2.5.0. More information here.
Click here to open manual pages for actions used in this project.
Submission history
[v1] 23 Sep 2019: original submission
[v2] 17 Jun 2020: updated doi
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