Project ID: plumID:19.013
Name: RNA FF FITTING
Archive: https://github.com/bussilab/ff-fitting-tools/archive/master.zip (browse)
Category: methods
Keywords: force field, RNA
PLUMED version: 2.4
Contributor: Giovanni Bussi
Submitted on: 19 Apr 2019
Last revised: 06 May 2019
Publication: A. Cesari, S. Bottaro, K. Lindorff-Larsen, P. Banáš, J. Šponer, G. Bussi, Fitting Corrections to an RNA Force Field Using Experimental Data. Journal of Chemical Theory and Computation. 15, 3425–3431 (2019)
PLUMED input files
| File | Compatible with |
|---|---|
| apply_corrections/plumed.dat |   |
Last tested: 22 Apr 2025, 10:18:54
Project description and instructions
The zip file contains the code used to fit dihedral corrections. It also contains a PLUMED input file that can be used to apply corrections for a AAAA tetranucleotide. In order to generate corrections for RNA molecules with different sequences, one should download the script and modify it accordingly.
Click here to open manual pages for actions used in this project.
Submission history
[v1] 19 Apr 2019: original submission
[v2] 06 May 2019: added DOI
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