Project ID: plumID:19.003
Name: EMMI ClpP
Archive: https://github.com/maxbonomi/plumed-nest-data/raw/master/projects-2018/EMMI-ClpP.zip
Category: bio
Keywords: metainference, cryo-EM
PLUMED version: 2.6-dev
Contributor: Max Bonomi
Submitted on: 13 Apr 2019
Last revised: 06 May 2019
Publication: S. Vahidi, Z. A. Ripstein, M. Bonomi, T. Yuwen, M. F. Mabanglo, J. B. Juravsky, K. Rizzolo, A. Velyvis, W. A. Houry, M. Vendruscolo, J. L. Rubinstein, L. E. Kay, Reversible inhibition of the ClpP protease via an N-terminal conformational switch. Proceedings of the National Academy of Sciences. 115 (2018)
PLUMED input files
| File | Compatible with |
|---|---|
| EMMI-ClpP/PRODUCTION/plumed.dat |   |
Last tested: 22 Apr 2025, 10:21:11
Project description and instructions
Metainference is used to model a conformational ensemble of the ClpP protease using a cryo-EM density map. The archive contains the GROMACS input files (SETUP directory, GROMACS v. 4.5.7), along with the PLUMED input files (PRODUCTION directory). These files have been updated to work with PLUMED version > 2.5.
Click here to open manual pages for actions used in this project.
Submission history
[v1] 13 Apr 2019: original submission
[v2] 06 May 2019: updated description
Badge
Click on the image below and get the code to add the badge to your website!
