PLUMED-NEST

Project ID: plumID:23.003
Source: Case_2/Test_1/1D_lambda_MetaD/rep_1/State_B/plumed_sum_bias.dat
Originally used with PLUMED version: 2.8
Stable: zipped raw stdout - zipped raw stderr - stderr
Master: zipped raw stdout - zipped raw stderr - stderr

Click on the labels of the actions for more information on what each action computes

lambdaThe READ action with label lambda calculates the following quantities:
 Quantity   
 Type   
 Description  
lambda
scalar
the value calculated by this action: 
READ
Read quantities from a colvar file. This action has hidden defaults. More details
 
FILE
the name of the file from which to read these quantities
=COLVAR_fake 
VALUES
the values to read from the file
=lambda 
IGNORE_TIME
 ignore the time in the colvar file
 
IGNORE_FORCES
 use this flag if the forces added by any bias can be safely ignored
lambda: 
READ
Read quantities from a colvar file. This action uses the defaults shown here. More details
 
FILE
the name of the file from which to read these quantities
=COLVAR_fake 
VALUES
the values to read from the file
=lambda 
IGNORE_TIME
 ignore the time in the colvar file
 
IGNORE_FORCES
 use this flag if the forces added by any bias can be safely ignored
  
STRIDE
 the frequency with which the file should be read
=1 
EVERY
 only read every nth line of the colvar file
=1

METAD
Used to performed metadynamics on one or more collective variables. More details
 ...
ARG
the input for this action is the scalar output from one or more other actions
=lambda 
SIGMA
the widths of the Gaussian hills
=0.01     
HEIGHT
the heights of the Gaussian hills
=0
PACE
the frequency for hill addition
=5000000        
GRID_MIN
the lower bounds for the grid
=0   
GRID_MAX
the upper bounds for the grid
=19   
GRID_BIN
the number of bins for the grid
=19
TEMP
the system temperature - this is only needed if you are doing well-tempered metadynamics
=298
BIASFACTOR
use well tempered metadynamics and use this bias factor
=60
LABEL
a label for the action so that its output can be referenced in the input to other actions
=metadThe METAD action with label metad calculates the following quantities:
 Quantity   
 Type   
 Description  
metad.bias
scalar
the instantaneous value of the bias potential    
FILE
 a file in which the list of added hills is stored
=HILLS_1D_modified_fake
RESTART
allows per-action setting of restart (YES/NO/AUTO)
=YES
... METAD

PRINT
Print quantities to a file. More details
 
STRIDE
 the frequency with which the quantities of interest should be output
=1 
ARG
the input for this action is the scalar output from one or more other actions
=lambda,metad.bias 
FILE
the name of the file on which to output these quantities
=COLVAR_SUM_BIAS