PLUMED: PLUMED is starting
PLUMED: Version: 2.10.0 (git: 09264719e) compiled on Jun 10 2026 at 10:34:57
PLUMED: Please cite these papers when using PLUMED [1][2]
PLUMED: For further information see the PLUMED web page at http://www.plumed.org
PLUMED: Root: /home/runner/opt/lib/plumed
PLUMED: LibraryPath: /home/runner/opt/lib/libplumedKernel.so
PLUMED: For installed feature, see /home/runner/opt/lib/plumed/src/config/config.txt
PLUMED: Molecular dynamics engine: driver
PLUMED: Precision of reals: 8
PLUMED: Running over 1 node
PLUMED: Number of threads: 1
PLUMED: Cache line size: 512
PLUMED: Number of atoms: 100000
PLUMED: File suffix: 
PLUMED: FILE: logn_jeff.dat
PLUMED: Action GROUP
PLUMED:   with label batoms
PLUMED:   importing group 'batoms' from index file index.ndx
PLUMED:   list of atoms:
PLUMED:  7 39 53 73 90 112 128 143 165 182 191 204 227 246 255 271 287 308 330 340 364 378 400 431 440
PLUMED:  455 471 487 497 516 538 560 579 603 622 634 677 690 699 718 729 740 754 764 783 807 822 841 852 871
PLUMED:  890 912 927 946 960 980 991 1005 1024 1040 1062 1081 1100 1112 1128 1147 1164 1193 1207 1229 1248 1269 1288 1304 1324
PLUMED:  1339 1359 1378 1395 1412 1424 1443 1465 1487 1507 1524 1536 1546 1557 1598 1607 1629 1640 1662 1673 1692 1711 1733 1744 1765
PLUMED:  1784 1804 1821 1840 1859 1874 1883 1902 1912 1932 1943 1960 1971 1988 2012 2028 2047 2064 2088 2100 2119 2144 2155 2172 2186
PLUMED:  2205 2224 2243 2257 2271 2284 2293 2303 2322 2344 2363 2373 2385 2403 2412 2431 2441 2465 2475 2493 2502 2532 2548 2572 2586
PLUMED:  2621 2653 2669 2685 2699 2718 2742 2763 2787 2800 2811 2826 2845 2864 2881 2890 2901 2923 2944 2965 2976 2990 3000 3016 3028
PLUMED:  3047 3071 3082 3099 3108 3119 3138 3158 3168 3183 3200 3216 3230 3254 3278 3288 3307 3330 3339 3348 3360 3371 3386 3405 3417
PLUMED:  3434 3453 3473 3497 3516 3536 3560 3574 3591 3600 3617 3628 3640 3671 3687 3714 3723 3732 3748 3762 3773 3793 3804 3816 3862
PLUMED:  3884 3907 3918 3940 3964 3974 3998 4015 4027 4047 4058 4080 4096 4115 4129 4140 4159 4171 4186 4196 4205 4229 4240 4259 4278
PLUMED:  4289 4306 4323 4342 4359 4380 4395 4406 4420 4442 4466 4485 4496 4506 4528 4538 4548 4567 4577 4597 4608 4628 4648 4665 4677
PLUMED:  4693 4707 4732 4743 4762 4790 4809 4833
PLUMED: Action BAIES
PLUMED:   with label baies
PLUMED:   number of atoms involved : 283
PLUMED:   AF2 fit parameters file : logn.out
PLUMED:   prior type : JEFFREYS
PLUMED:   noise model type : lognormal
PLUMED:   number of pairs involved : 724
PLUMED:   temperature of the system in energy unit : 2.478541
PLUMED:   minimum value of sigma : -1.000000
PLUMED:   using periodic boundary conditions
PLUMED:   added component to this action:  baies.ene 
PLUMED:   Bibliography [3][4]
PLUMED: Action PRINT
PLUMED:   with label @2
PLUMED:   with stride 500
PLUMED:   with arguments : 
PLUMED:    scalar with label baies.ene 
PLUMED:   on file COLVAR
PLUMED:   with format  %f
PLUMED: Action BIASVALUE
PLUMED:   with label bbias
PLUMED:   with arguments : 
PLUMED:    scalar with label baies.ene 
PLUMED:   added component to this action:  bbias.bias 
PLUMED:   multiple time step 4 [5]
PLUMED:   added component to this action:  bbias.baies.ene_bias 
PLUMED: END FILE: logn_jeff.dat
PLUMED: Timestep: 1.000000
PLUMED: KbT: 2.490000
PLUMED: Relevant bibliography:
PLUMED:   [1] The PLUMED consortium, Nat. Methods 16, 670 (2019)
PLUMED:   [2] Tribello, Bonomi, Branduardi, Camilloni, and Bussi, Comput. Phys. Commun. 185, 604 (2014)
PLUMED:   [3] Bonomi, Camilloni, Bioinformatics, 33, 3999 (2017)
PLUMED:   [4] Schnapka, Morozova, Sen, Bonomi, bioRxiv (2025) doi: XXX
PLUMED:   [5] Ferrarotti, Bottaro, Perez-Villa, and Bussi, J. Chem. Theory Comput. 11, 139 (2015)
PLUMED: Please read and cite where appropriate!
PLUMED: Finished setup
PLUMED:                                               Cycles        Total      Average      Minimum      Maximum
PLUMED:                                                    1     0.009557     0.009557     0.009557     0.009557
