Project ID: plumID:22.039
Stderr for source: glycine_plumed.dat
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#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above WARNING: using a legacy ActionRegister.h include path, please use <<#include "core/ActionRegister.h">> PairOrientationalEntropy.Z1gtS8.cpp: In constructor ‘PLMD::colvar::PairOrientationalEntropy::PairOrientationalEntropy(const PLMD::ActionOptions&)’: PairOrientationalEntropy.Z1gtS8.cpp:193:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator, int>::value_type’ {aka ‘int’} [-Wsign-compare] 193 | for(unsigned int i=0;i<nhist_[0];i++) { PairOrientationalEntropy.Z1gtS8.cpp:194:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 194 | for(unsigned int j=0;j<nhist_[1];j++) { PairOrientationalEntropy.Z1gtS8.cpp:252:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 252 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.Z1gtS8.cpp:256:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 256 | for(unsigned i=0;i<nhist_[1];++i){ PairOrientationalEntropy.Z1gtS8.cpp: In member function ‘virtual void PLMD::colvar::PairOrientationalEntropy::calculate()’: PairOrientationalEntropy.Z1gtS8.cpp:511:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 511 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.Z1gtS8.cpp:512:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 512 | for(unsigned j=0;j<nhist_[1];++j){ PairOrientationalEntropy.Z1gtS8.cpp:523:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 523 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.Z1gtS8.cpp:524:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 524 | for(unsigned j=0;j<nhist_[1];++j){ PairOrientationalEntropy.Z1gtS8.cpp:562:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 562 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.Z1gtS8.cpp:563:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 563 | for(unsigned j=0;j<nhist_[1];++j){ PairOrientationalEntropy.Z1gtS8.cpp:581:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 581 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.Z1gtS8.cpp:582:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 582 | for(unsigned j=0;j<nhist_[1];++j){ PairOrientationalEntropy.Z1gtS8.cpp:593:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 593 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.Z1gtS8.cpp:594:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 594 | for(unsigned j=0;j<nhist_[1];++j){ PairOrientationalEntropy.Z1gtS8.cpp: In member function ‘double PLMD::colvar::PairOrientationalEntropy::integrate(PLMD::Matrix , std::vector ) const’: PairOrientationalEntropy.Z1gtS8.cpp:626:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 626 | for(unsigned i=1;i<(nhist_[0]-1);++i){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.Z1gtS8.cpp:627:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 627 | for(unsigned j=1;j<(nhist_[1]-1);++j){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.Z1gtS8.cpp:632:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 632 | for(unsigned i=1;i<(nhist_[0]-1);++i){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.Z1gtS8.cpp:636:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 636 | for(unsigned j=1;j<(nhist_[1]-1);++j){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.Z1gtS8.cpp: In member function ‘PLMD::Vector PLMD::colvar::PairOrientationalEntropy::integrate(PLMD::Matrix<PLMD::VectorGeneric<3> >, std::vector ) const’: PairOrientationalEntropy.Z1gtS8.cpp:653:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 653 | for(unsigned i=1;i<(nhist_[0]-1);++i){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.Z1gtS8.cpp:654:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 654 | for(unsigned j=1;j<(nhist_[1]-1);++j){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.Z1gtS8.cpp:659:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 659 | for(unsigned i=1;i<(nhist_[0]-1);++i){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.Z1gtS8.cpp:663:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 663 | for(unsigned j=1;j<(nhist_[1]-1);++j){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.Z1gtS8.cpp: In member function ‘PLMD::Tensor PLMD::colvar::PairOrientationalEntropy::integrate(PLMD::Matrix<PLMD::TensorGeneric<3, 3> >, std::vector ) const’: PairOrientationalEntropy.Z1gtS8.cpp:680:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 680 | for(unsigned i=1;i<(nhist_[0]-1);++i){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.Z1gtS8.cpp:681:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 681 | for(unsigned j=1;j<(nhist_[1]-1);++j){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.Z1gtS8.cpp:686:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 686 | for(unsigned i=1;i<(nhist_[0]-1);++i){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.Z1gtS8.cpp:690:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 690 | for(unsigned j=1;j<(nhist_[1]-1);++j){ | ~^~~~~~~~~~~~~~ PairOrientationalEntropy.Z1gtS8.cpp: In member function ‘void PLMD::colvar::PairOrientationalEntropy::outputGofr(PLMD::Matrix , const char*)’: PairOrientationalEntropy.Z1gtS8.cpp:705:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 705 | for(unsigned i=0;i<nhist_[0];++i){ PairOrientationalEntropy.Z1gtS8.cpp:706:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator , int>::value_type’ {aka ‘int’} [-Wsign-compare] 706 | for(unsigned j=0;j<nhist_[1];++j){ terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (core/ActionWithValue.cpp:176) virtual std::string PLMD::ActionWithValue::getOutputComponentDescription(const string&, const PLMD::Keywords&) const +++ assertion failed: keys.outputComponentExists(cname) if the component names are customizable then you should override this function [fv-az1532-24:40233] *** Process received signal *** [fv-az1532-24:40233] Signal: Aborted (6) [fv-az1532-24:40233] Signal code: (-6) [fv-az1532-24:40233] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f57d1c42520] [fv-az1532-24:40233] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f57d1c969fc] [fv-az1532-24:40233] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f57d1c42476] [fv-az1532-24:40233] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f57d1c287f3] [fv-az1532-24:40233] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa2b9e)[0x7f57d20a2b9e] [fv-az1532-24:40233] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae20c)[0x7f57d20ae20c] [fv-az1532-24:40233] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae277)[0x7f57d20ae277] [fv-az1532-24:40233] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f57d20ae52b] [fv-az1532-24:40233] [ 8] plumed_master(+0x14274)[0x55586151a274] [fv-az1532-24:40233] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f57d1c29d90] [fv-az1532-24:40233] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f57d1c29e40] [fv-az1532-24:40233] [11] plumed_master(+0x14ed5)[0x55586151aed5] [fv-az1532-24:40233] *** End of error message *** </pre>