PLUMED-NEST-TEST-SITE

Project ID: plumID:22.021
Source: IceV-Liquid/4-BiasedCoexistence/COEX_4000.0atm/235.0K/plumed.strict.dat
Originally used with PLUMED version: 2.8
Stable: zipped raw stdout - zipped raw stderr - stderr
Master: zipped raw stdout - zipped raw stderr - stderr

Click on the labels of the actions for more information on what each action computes

# Strict counting of molecules
ENVIRONMENTSIMILARITY
Measure how similar the environment around atoms is to that found in some reference crystal structure. This action is a shortcut and it has hidden defaults. More details
 ...
 
SPECIES
this keyword is used for colvars such as coordination number
=1-2016:3
 
SIGMA
 the width to use for the gaussian kernels
=0.0725
 
CRYSTAL_STRUCTURE
 Targeted crystal structure
=CUSTOM
 
LABEL
a label for the action so that its output can be referenced in the input to other actions
=refcv2
 
REFERENCE_1
PDB files with relative distances from central atom
=env1.pdb
 
REFERENCE_2
PDB files with relative distances from central atom
=env2.pdb
 
REFERENCE_3
PDB files with relative distances from central atom
=env3.pdb
 
REFERENCE_4
PDB files with relative distances from central atom
=env4.pdb
 
REFERENCE_5
PDB files with relative distances from central atom
=env5.pdb
 
REFERENCE_6
PDB files with relative distances from central atom
=env6.pdb
 
REFERENCE_7
PDB files with relative distances from central atom
=env7.pdb
 
REFERENCE_8
PDB files with relative distances from central atom
=env8.pdb
 
REFERENCE_9
PDB files with relative distances from central atom
=env9.pdb
 
REFERENCE_10
PDB files with relative distances from central atom
=env10.pdb
 
REFERENCE_11
PDB files with relative distances from central atom
=env11.pdb
 
REFERENCE_12
PDB files with relative distances from central atom
=env12.pdb
 
REFERENCE_13
PDB files with relative distances from central atom
=env13.pdb
 
REFERENCE_14
PDB files with relative distances from central atom
=env14.pdb
 
REFERENCE_15
PDB files with relative distances from central atom
=env15.pdb
 
REFERENCE_16
PDB files with relative distances from central atom
=env16.pdb
 
REFERENCE_17
PDB files with relative distances from central atom
=env17.pdb
 
REFERENCE_18
PDB files with relative distances from central atom
=env18.pdb
 
REFERENCE_19
PDB files with relative distances from central atom
=env19.pdb
 
REFERENCE_20
PDB files with relative distances from central atom
=env20.pdb
 
REFERENCE_21
PDB files with relative distances from central atom
=env21.pdb
 
REFERENCE_22
PDB files with relative distances from central atom
=env22.pdb
 
REFERENCE_23
PDB files with relative distances from central atom
=env23.pdb
 
REFERENCE_24
PDB files with relative distances from central atom
=env24.pdb
 
REFERENCE_25
PDB files with relative distances from central atom
=env25.pdb
 
REFERENCE_26
PDB files with relative distances from central atom
=env26.pdb
 
REFERENCE_27
PDB files with relative distances from central atom
=env27.pdb
 
REFERENCE_28
PDB files with relative distances from central atom
=env28.pdb
 
MORE_THAN
calculate the number of variables that are more than a certain target value
={CUBIC D_0=0.83000 D_MAX=0.83001}
 
MEAN
 calculate the mean of all the quantities
... ENVIRONMENTSIMILARITY
The ENVIRONMENTSIMILARITY action with label refcv2 calculates the following quantities:
 Quantity   
 Description  
refcv2.morethan
the number of colvars that have a value more than a threshold
refcv2.mean
the mean of the colvars
ENVIRONMENTSIMILARITY
Measure how similar the environment around atoms is to that found in some reference crystal structure. This action is a shortcut and uses the defaults shown here. More details
 ...
 
SPECIES
this keyword is used for colvars such as coordination number
=1-2016:3
 
SIGMA
 the width to use for the gaussian kernels
=0.0725
 
CRYSTAL_STRUCTURE
 Targeted crystal structure
=CUSTOM
 
LABEL
a label for the action so that its output can be referenced in the input to other actions
=refcv2
 
REFERENCE_1
PDB files with relative distances from central atom
=env1.pdb
 
REFERENCE_2
PDB files with relative distances from central atom
=env2.pdb
 
REFERENCE_3
PDB files with relative distances from central atom
=env3.pdb
 
REFERENCE_4
PDB files with relative distances from central atom
=env4.pdb
 
REFERENCE_5
PDB files with relative distances from central atom
=env5.pdb
 
REFERENCE_6
PDB files with relative distances from central atom
=env6.pdb
 
REFERENCE_7
PDB files with relative distances from central atom
=env7.pdb
 
REFERENCE_8
PDB files with relative distances from central atom
=env8.pdb
 
REFERENCE_9
PDB files with relative distances from central atom
=env9.pdb
 
REFERENCE_10
PDB files with relative distances from central atom
=env10.pdb
 
REFERENCE_11
PDB files with relative distances from central atom
=env11.pdb
 
REFERENCE_12
PDB files with relative distances from central atom
=env12.pdb
 
REFERENCE_13
PDB files with relative distances from central atom
=env13.pdb
 
REFERENCE_14
PDB files with relative distances from central atom
=env14.pdb
 
REFERENCE_15
PDB files with relative distances from central atom
=env15.pdb
 
REFERENCE_16
PDB files with relative distances from central atom
=env16.pdb
 
REFERENCE_17
PDB files with relative distances from central atom
=env17.pdb
 
REFERENCE_18
PDB files with relative distances from central atom
=env18.pdb
 
REFERENCE_19
PDB files with relative distances from central atom
=env19.pdb
 
REFERENCE_20
PDB files with relative distances from central atom
=env20.pdb
 
REFERENCE_21
PDB files with relative distances from central atom
=env21.pdb
 
REFERENCE_22
PDB files with relative distances from central atom
=env22.pdb
 
REFERENCE_23
PDB files with relative distances from central atom
=env23.pdb
 
REFERENCE_24
PDB files with relative distances from central atom
=env24.pdb
 
REFERENCE_25
PDB files with relative distances from central atom
=env25.pdb
 
REFERENCE_26
PDB files with relative distances from central atom
=env26.pdb
 
REFERENCE_27
PDB files with relative distances from central atom
=env27.pdb
 
REFERENCE_28
PDB files with relative distances from central atom
=env28.pdb
 
MORE_THAN
calculate the number of variables that are more than a certain target value
={CUBIC D_0=0.83000 D_MAX=0.83001}
 
MEAN
 calculate the mean of all the quantities
 
CUTOFF
 how many multiples of sigma would you like to consider beyond the maximum distance in the environment
=3 
LCUTOFF
 any atoms separated by less than this tolerance should be ignored
=0.0001 
LAMBDA
 Lambda parameter
=100
... ENVIRONMENTSIMILARITY
# PLUMED interprets the command:
# ENVIRONMENTSIMILARITY ...
#  SPECIES=1-2016:3
#  SIGMA=0.0725
#  CRYSTAL_STRUCTURE=CUSTOM
#  LABEL=refcv2
#  REFERENCE_1=env1.pdb
#  REFERENCE_2=env2.pdb
#  REFERENCE_3=env3.pdb
#  REFERENCE_4=env4.pdb
#  REFERENCE_5=env5.pdb
#  REFERENCE_6=env6.pdb
#  REFERENCE_7=env7.pdb
#  REFERENCE_8=env8.pdb
#  REFERENCE_9=env9.pdb
#  REFERENCE_10=env10.pdb
#  REFERENCE_11=env11.pdb
#  REFERENCE_12=env12.pdb
#  REFERENCE_13=env13.pdb
#  REFERENCE_14=env14.pdb
#  REFERENCE_15=env15.pdb
#  REFERENCE_16=env16.pdb
#  REFERENCE_17=env17.pdb
#  REFERENCE_18=env18.pdb
#  REFERENCE_19=env19.pdb
#  REFERENCE_20=env20.pdb
#  REFERENCE_21=env21.pdb
#  REFERENCE_22=env22.pdb
#  REFERENCE_23=env23.pdb
#  REFERENCE_24=env24.pdb
#  REFERENCE_25=env25.pdb
#  REFERENCE_26=env26.pdb
#  REFERENCE_27=env27.pdb
#  REFERENCE_28=env28.pdb
#  MORE_THAN={CUBIC D_0=0.83000 D_MAX=0.83001}
#  MEAN
# ... ENVIRONMENTSIMILARITY
# as follows (Click the red comment above to revert to the short version of the input):
refcv2_cmat: 
DISTANCE_MATRIX
Calculate a matrix of distances More details
 
COMPONENTS
 also calculate the components of the vector connecting the atoms in the contact matrix
 
GROUP
the atoms for which you would like to calculate the adjacency matrix
=1-2016:3 
CUTOFF
 ignore distances that have a value larger than this cutoff
=0.652446 
The DISTANCE_MATRIX action with label refcv2_cmat calculates the following quantities:
 Quantity   
 Description  
refcv2_cmat.w
a matrix containing the weights for the bonds between each pair of atoms
refcv2_cmat.x
the projection of the bond on the x axis
refcv2_cmat.y
the projection of the bond on the y axis
refcv2_cmat.z
the projection of the bond on the z axis
refcv2_cmat.value
a matrix containing the weights for the bonds between each pair of atomsrefcv2_grp: 
GROUP
Define a group of atoms so that a particular list of atoms can be referenced with a single label in definitions of CVs or virtual atoms. More details
 
ATOMS
the numerical indexes for the set of atoms in the group
=1-2016:3 
The GROUP action with label refcv2_grp calculates somethingrefcv2_ones: 
ONES
Create a constant vector with all elements equal to one More details
 
SIZE
the number of ones that you would like to create
=672
The ONES action with label refcv2_ones calculates the following quantities:
 Quantity   
 Description  
refcv2_ones.value
a vector of ones with the required number of elementsrefcv2_matenv1: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.28)^2+(y--0.067)^2+(z--0.317)^2)/(4*0.00525625))+exp(-((x--0.031)^2+(y-0.163)^2+(z--0.227)^2)/(4*0.00525625))+exp(-((x--0.285)^2+(y-0.234)^2+(z--0.133)^2)/(4*0.00525625))+exp(-((x--0.283)^2+(y-0.006)^2+(z-0.034)^2)/(4*0.00525625))+exp(-((x--0.243)^2+(y-0.156)^2+(z-0.27)^2)/(4*0.00525625))+exp(-((x-0.012)^2+(y-0.227)^2+(z-0.17)^2)/(4*0.00525625))+exp(-((x--0.136)^2+(y-0.411)^2+(z-0.025)^2)/(4*0.00525625))+exp(-((x-0.175)^2+(y--0.2083)^2+(z-0.03)^2)/(4*0.00525625))+exp(-((x--0.078)^2+(y--0.2243)^2+(z--0.219)^2)/(4*0.00525625))+exp(-((x-0.169)^2+(y--0.1453)^2+(z--0.316)^2)/(4*0.00525625))+exp(-((x--0.136)^2+(y--0.3413)^2+(z-0.025)^2)/(4*0.00525625))+exp(-((x--0.205)^2+(y--0.2203)^2+(z-0.263)^2)/(4*0.00525625))+exp(-((x-0.257)^2+(y-0.01)^2+(z-0.255)^2)/(4*0.00525625))+exp(-((x-0.185)^2+(y-0.312)^2+(z--0.134)^2)/(4*0.00525625))+exp(-((x-0.003)^2+(y--0.061)^2+(z-0.355)^2)/(4*0.00525625))+exp(-((x-0.328)^2+(y-0.131)^2+(z-0.016)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv1 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv1.value
an arbitrary functionrefcv2_env1: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv1,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env1 calculates the following quantities:
 Quantity   
 Description  
refcv2_env1.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env1..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv2: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.252)^2+(y--0.002)^2+(z--0.257)^2)/(4*0.00525625))+exp(-((x--0.309)^2+(y-0.125)^2+(z--0.018)^2)/(4*0.00525625))+exp(-((x--0.165)^2+(y-0.309)^2+(z-0.136)^2)/(4*0.00525625))+exp(-((x-0.003)^2+(y--0.073)^2+(z--0.351)^2)/(4*0.00525625))+exp(-((x-0.252)^2+(y-0.157)^2+(z--0.261)^2)/(4*0.00525625))+exp(-((x--0.002)^2+(y-0.228)^2+(z--0.167)^2)/(4*0.00525625))+exp(-((x-0.04)^2+(y-0.15)^2+(z-0.236)^2)/(4*0.00525625))+exp(-((x-0.295)^2+(y-0.221)^2+(z-0.136)^2)/(4*0.00525625))+exp(-((x-0.147)^2+(y-0.405)^2+(z--0.009)^2)/(4*0.00525625))+exp(-((x--0.172)^2+(y--0.2103)^2+(z--0.028)^2)/(4*0.00525625))+exp(-((x--0.174)^2+(y--0.1553)^2+(z-0.321)^2)/(4*0.00525625))+exp(-((x-0.205)^2+(y--0.2303)^2+(z--0.253)^2)/(4*0.00525625))+exp(-((x-0.147)^2+(y--0.3473)^2+(z--0.009)^2)/(4*0.00525625))+exp(-((x-0.078)^2+(y--0.2263)^2+(z-0.229)^2)/(4*0.00525625))+exp(-((x-0.283)^2+(y--0.006)^2+(z--0.034)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv2 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv2.value
an arbitrary functionrefcv2_env2: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv2,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env2 calculates the following quantities:
 Quantity   
 Description  
refcv2_env2.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env2..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv3: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x-0.01)^2+(y--0.232)^2+(z--0.164)^2)/(4*0.00525625))+exp(-((x-0.257)^2+(y--0.153)^2+(z--0.262)^2)/(4*0.00525625))+exp(-((x-0.29)^2+(y-0.004)^2+(z--0.024)^2)/(4*0.00525625))+exp(-((x-0.044)^2+(y--0.157)^2+(z-0.232)^2)/(4*0.00525625))+exp(-((x-0.297)^2+(y--0.229)^2+(z-0.14)^2)/(4*0.00525625))+exp(-((x--0.253)^2+(y--0.016)^2+(z--0.249)^2)/(4*0.00525625))+exp(-((x--0.006)^2+(y-0.063)^2+(z--0.346)^2)/(4*0.00525625))+exp(-((x--0.163)^2+(y--0.317)^2+(z-0.14)^2)/(4*0.00525625))+exp(-((x--0.311)^2+(y--0.133)^2+(z--0.005)^2)/(4*0.00525625))+exp(-((x--0.175)^2+(y-0.2083)^2+(z--0.03)^2)/(4*0.00525625))+exp(-((x-0.21)^2+(y-0.2123)^2+(z--0.253)^2)/(4*0.00525625))+exp(-((x-0.082)^2+(y-0.2183)^2+(z-0.225)^2)/(4*0.00525625))+exp(-((x--0.172)^2+(y-0.1473)^2+(z-0.325)^2)/(4*0.00525625))+exp(-((x-0.153)^2+(y-0.3393)^2+(z--0.014)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv3 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv3.value
an arbitrary functionrefcv2_env3: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv3,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env3 calculates the following quantities:
 Quantity   
 Description  
refcv2_env3.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env3..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv4: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.28)^2+(y--0.236)^2+(z--0.14)^2)/(4*0.00525625))+exp(-((x--0.033)^2+(y--0.157)^2+(z--0.238)^2)/(4*0.00525625))+exp(-((x--0.246)^2+(y--0.161)^2+(z-0.256)^2)/(4*0.00525625))+exp(-((x-0.007)^2+(y--0.233)^2+(z-0.164)^2)/(4*0.00525625))+exp(-((x--0.002)^2+(y-0.055)^2+(z-0.349)^2)/(4*0.00525625))+exp(-((x-0.17)^2+(y--0.314)^2+(z--0.139)^2)/(4*0.00525625))+exp(-((x-0.319)^2+(y--0.137)^2+(z-0.019)^2)/(4*0.00525625))+exp(-((x-0.25)^2+(y--0.016)^2+(z-0.257)^2)/(4*0.00525625))+exp(-((x-0.172)^2+(y-0.2103)^2+(z-0.028)^2)/(4*0.00525625))+exp(-((x--0.29)^2+(y--0.004)^2+(z-0.024)^2)/(4*0.00525625))+exp(-((x--0.08)^2+(y-0.2083)^2+(z--0.229)^2)/(4*0.00525625))+exp(-((x--0.208)^2+(y-0.2143)^2+(z-0.249)^2)/(4*0.00525625))+exp(-((x-0.175)^2+(y-0.1373)^2+(z--0.323)^2)/(4*0.00525625))+exp(-((x--0.137)^2+(y-0.3353)^2+(z-0.01)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv4 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv4.value
an arbitrary functionrefcv2_env4: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv4,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env4 calculates the following quantities:
 Quantity   
 Description  
refcv2_env4.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env4..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv5: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.297)^2+(y-0.229)^2+(z--0.14)^2)/(4*0.00525625))+exp(-((x--0.083)^2+(y--0.218)^2+(z--0.225)^2)/(4*0.00525625))+exp(-((x-0.172)^2+(y--0.147)^2+(z--0.325)^2)/(4*0.00525625))+exp(-((x--0.045)^2+(y-0.158)^2+(z--0.232)^2)/(4*0.00525625))+exp(-((x--0.2906)^2+(y--0.004)^2+(z-0.0243)^2)/(4*0.00525625))+exp(-((x-0.1744)^2+(y--0.208)^2+(z-0.0303)^2)/(4*0.00525625))+exp(-((x--0.2576)^2+(y-0.154)^2+(z-0.2613)^2)/(4*0.00525625))+exp(-((x--0.2106)^2+(y--0.211)^2+(z-0.2533)^2)/(4*0.00525625))+exp(-((x-0.2524)^2+(y-0.017)^2+(z-0.2483)^2)/(4*0.00525625))+exp(-((x-0.0054)^2+(y--0.062)^2+(z-0.3463)^2)/(4*0.00525625))+exp(-((x--0.0106)^2+(y-0.233)^2+(z-0.1643)^2)/(4*0.00525625))+exp(-((x-0.163)^2+(y-0.3173)^2+(z--0.14)^2)/(4*0.00525625))+exp(-((x--0.1536)^2+(y--0.338)^2+(z-0.0143)^2)/(4*0.00525625))+exp(-((x-0.3114)^2+(y-0.133)^2+(z-0.0053)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv5 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv5.value
an arbitrary functionrefcv2_env5: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv5,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env5 calculates the following quantities:
 Quantity   
 Description  
refcv2_env5.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env5..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv6: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x-0.137)^2+(y--0.334)^2+(z--0.01)^2)/(4*0.00525625))+exp(-((x-0.08)^2+(y--0.207)^2+(z-0.229)^2)/(4*0.00525625))+exp(-((x--0.174)^2+(y--0.136)^2+(z-0.323)^2)/(4*0.00525625))+exp(-((x-0.033)^2+(y-0.158)^2+(z-0.237)^2)/(4*0.00525625))+exp(-((x-0.28)^2+(y-0.237)^2+(z-0.14)^2)/(4*0.00525625))+exp(-((x--0.1724)^2+(y--0.21)^2+(z--0.0283)^2)/(4*0.00525625))+exp(-((x--0.2504)^2+(y-0.017)^2+(z--0.2573)^2)/(4*0.00525625))+exp(-((x-0.0026)^2+(y--0.055)^2+(z--0.3493)^2)/(4*0.00525625))+exp(-((x--0.318)^2+(y-0.137)^2+(z--0.019)^2)/(4*0.00525625))+exp(-((x--0.0064)^2+(y-0.233)^2+(z--0.1643)^2)/(4*0.00525625))+exp(-((x-0.2076)^2+(y--0.214)^2+(z--0.2493)^2)/(4*0.00525625))+exp(-((x-0.2906)^2+(y-0.004)^2+(z--0.0243)^2)/(4*0.00525625))+exp(-((x-0.2456)^2+(y-0.162)^2+(z--0.2563)^2)/(4*0.00525625))+exp(-((x--0.169)^2+(y-0.3153)^2+(z-0.139)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv6 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv6.value
an arbitrary functionrefcv2_env6: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv6,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env6 calculates the following quantities:
 Quantity   
 Description  
refcv2_env6.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env6..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv7: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.169)^2+(y-0.146)^2+(z-0.316)^2)/(4*0.00525625))+exp(-((x-0.031)^2+(y--0.162)^2+(z-0.227)^2)/(4*0.00525625))+exp(-((x-0.078)^2+(y-0.225)^2+(z-0.218)^2)/(4*0.00525625))+exp(-((x-0.286)^2+(y--0.233)^2+(z-0.133)^2)/(4*0.00525625))+exp(-((x-0.281)^2+(y-0.068)^2+(z-0.317)^2)/(4*0.00525625))+exp(-((x-0.2826)^2+(y--0.006)^2+(z--0.0343)^2)/(4*0.00525625))+exp(-((x--0.0114)^2+(y--0.227)^2+(z--0.1703)^2)/(4*0.00525625))+exp(-((x-0.2426)^2+(y--0.156)^2+(z--0.2703)^2)/(4*0.00525625))+exp(-((x-0.2046)^2+(y-0.221)^2+(z--0.2633)^2)/(4*0.00525625))+exp(-((x-0.137)^2+(y-0.341)^2+(z--0.025)^2)/(4*0.00525625))+exp(-((x--0.328)^2+(y--0.13)^2+(z--0.016)^2)/(4*0.00525625))+exp(-((x--0.2574)^2+(y--0.01)^2+(z--0.2553)^2)/(4*0.00525625))+exp(-((x--0.0024)^2+(y-0.061)^2+(z--0.3553)^2)/(4*0.00525625))+exp(-((x--0.1744)^2+(y-0.208)^2+(z--0.0303)^2)/(4*0.00525625))+exp(-((x-0.137)^2+(y--0.4113)^2+(z--0.025)^2)/(4*0.00525625))+exp(-((x--0.185)^2+(y--0.3113)^2+(z-0.134)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv7 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv7.value
an arbitrary functionrefcv2_env7: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv7,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env7 calculates the following quantities:
 Quantity   
 Description  
refcv2_env7.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env7..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv8: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.294)^2+(y--0.221)^2+(z--0.136)^2)/(4*0.00525625))+exp(-((x--0.04)^2+(y--0.15)^2+(z--0.236)^2)/(4*0.00525625))+exp(-((x--0.078)^2+(y-0.227)^2+(z--0.229)^2)/(4*0.00525625))+exp(-((x-0.175)^2+(y-0.155)^2+(z--0.321)^2)/(4*0.00525625))+exp(-((x--0.1456)^2+(y-0.347)^2+(z-0.0093)^2)/(4*0.00525625))+exp(-((x--0.285)^2+(y-0.067)^2+(z--0.321)^2)/(4*0.00525625))+exp(-((x--0.1456)^2+(y--0.4053)^2+(z-0.0093)^2)/(4*0.00525625))+exp(-((x-0.166)^2+(y--0.3093)^2+(z--0.136)^2)/(4*0.00525625))+exp(-((x-0.1724)^2+(y-0.21)^2+(z-0.0283)^2)/(4*0.00525625))+exp(-((x--0.2826)^2+(y-0.006)^2+(z-0.0343)^2)/(4*0.00525625))+exp(-((x--0.2516)^2+(y--0.156)^2+(z-0.2613)^2)/(4*0.00525625))+exp(-((x-0.2524)^2+(y-0.003)^2+(z-0.2573)^2)/(4*0.00525625))+exp(-((x--0.2046)^2+(y-0.231)^2+(z-0.2523)^2)/(4*0.00525625))+exp(-((x--0.0016)^2+(y-0.074)^2+(z-0.3513)^2)/(4*0.00525625))+exp(-((x-0.0034)^2+(y--0.227)^2+(z-0.1673)^2)/(4*0.00525625))+exp(-((x-0.3094)^2+(y--0.124)^2+(z-0.0183)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv8 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv8.value
an arbitrary functionrefcv2_env8: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv8,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env8 calculates the following quantities:
 Quantity   
 Description  
refcv2_env8.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env8..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv9: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.243)^2+(y--0.217)^2+(z--0.093)^2)/(4*0.00525625))+exp(-((x--0.252)^2+(y-0.071)^2+(z-0.092)^2)/(4*0.00525625))+exp(-((x--0.038)^2+(y--0.376)^2+(z-0.007)^2)/(4*0.00525625))+exp(-((x-0.217)^2+(y--0.305)^2+(z--0.093)^2)/(4*0.00525625))+exp(-((x-0.069)^2+(y--0.121)^2+(z--0.238)^2)/(4*0.00525625))+exp(-((x-0.205)^2+(y-0.2203)^2+(z--0.263)^2)/(4*0.00525625))+exp(-((x--0.078)^2+(y-0.2263)^2+(z--0.229)^2)/(4*0.00525625))+exp(-((x--0.25)^2+(y-0.016)^2+(z--0.257)^2)/(4*0.00525625))+exp(-((x-0.045)^2+(y--0.158)^2+(z-0.232)^2)/(4*0.00525625))+exp(-((x--0.2456)^2+(y--0.162)^2+(z-0.2563)^2)/(4*0.00525625))+exp(-((x--0.038)^2+(y-0.3763)^2+(z-0.007)^2)/(4*0.00525625))+exp(-((x-0.0344)^2+(y-0.075)^2+(z-0.3963)^2)/(4*0.00525625))+exp(-((x-0.208)^2+(y-0.1593)^2+(z-0.092)^2)/(4*0.00525625))+exp(-((x--0.1086)^2+(y-0.2563)^2+(z-0.2463)^2)/(4*0.00525625))+exp(-((x-0.3564)^2+(y--0.025)^2+(z-0.2373)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv9 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv9.value
an arbitrary functionrefcv2_env9: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv9,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env9 calculates the following quantities:
 Quantity   
 Description  
refcv2_env9.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env9..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv10: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.41)^2+(y--0.137)^2+(z--0.013)^2)/(4*0.00525625))+exp(-((x-0.047)^2+(y--0.365)^2+(z--0.008)^2)/(4*0.00525625))+exp(-((x--0.207)^2+(y--0.294)^2+(z-0.086)^2)/(4*0.00525625))+exp(-((x-0.247)^2+(y-0.079)^2+(z--0.097)^2)/(4*0.00525625))+exp(-((x--0.058)^2+(y--0.117)^2+(z-0.244)^2)/(4*0.00525625))+exp(-((x--0.351)^2+(y--0.021)^2+(z--0.256)^2)/(4*0.00525625))+exp(-((x--0.0394)^2+(y-0.075)^2+(z--0.4013)^2)/(4*0.00525625))+exp(-((x-0.2576)^2+(y--0.154)^2+(z--0.2613)^2)/(4*0.00525625))+exp(-((x-0.078)^2+(y-0.2243)^2+(z-0.219)^2)/(4*0.00525625))+exp(-((x--0.205)^2+(y-0.2303)^2+(z-0.253)^2)/(4*0.00525625))+exp(-((x-0.253)^2+(y-0.016)^2+(z-0.249)^2)/(4*0.00525625))+exp(-((x--0.033)^2+(y--0.158)^2+(z--0.237)^2)/(4*0.00525625))+exp(-((x-0.047)^2+(y-0.3873)^2+(z--0.008)^2)/(4*0.00525625))+exp(-((x-0.263)^2+(y--0.216)^2+(z-0.085)^2)/(4*0.00525625))+exp(-((x--0.202)^2+(y-0.1573)^2+(z--0.098)^2)/(4*0.00525625))+exp(-((x-0.104)^2+(y-0.2603)^2+(z--0.247)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv10 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv10.value
an arbitrary functionrefcv2_env10: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv10,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env10 calculates the following quantities:
 Quantity   
 Description  
refcv2_env10.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env10..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv11: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.2)^2+(y-0.308)^2+(z-0.089)^2)/(4*0.00525625))+exp(-((x--0.057)^2+(y-0.127)^2+(z-0.239)^2)/(4*0.00525625))+exp(-((x-0.047)^2+(y-0.387)^2+(z--0.009)^2)/(4*0.00525625))+exp(-((x-0.255)^2+(y--0.071)^2+(z--0.094)^2)/(4*0.00525625))+exp(-((x-0.25)^2+(y-0.23)^2+(z-0.09)^2)/(4*0.00525625))+exp(-((x-0.2516)^2+(y-0.156)^2+(z--0.2613)^2)/(4*0.00525625))+exp(-((x--0.0424)^2+(y--0.065)^2+(z--0.3973)^2)/(4*0.00525625))+exp(-((x--0.359)^2+(y-0.032)^2+(z--0.243)^2)/(4*0.00525625))+exp(-((x-0.047)^2+(y--0.3653)^2+(z--0.009)^2)/(4*0.00525625))+exp(-((x--0.21)^2+(y--0.2123)^2+(z-0.253)^2)/(4*0.00525625))+exp(-((x-0.08)^2+(y--0.2083)^2+(z-0.229)^2)/(4*0.00525625))+exp(-((x-0.106)^2+(y--0.2493)^2+(z--0.252)^2)/(4*0.00525625))+exp(-((x--0.216)^2+(y--0.1493)^2+(z--0.093)^2)/(4*0.00525625))+exp(-((x-0.252)^2+(y-0.002)^2+(z-0.257)^2)/(4*0.00525625))+exp(-((x--0.031)^2+(y-0.162)^2+(z--0.227)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv11 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv11.value
an arbitrary functionrefcv2_env11: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv11,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env11 calculates the following quantities:
 Quantity   
 Description  
refcv2_env11.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env11..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv12: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x-0.071)^2+(y-0.121)^2+(z--0.239)^2)/(4*0.00525625))+exp(-((x--0.254)^2+(y--0.071)^2+(z-0.1)^2)/(4*0.00525625))+exp(-((x--0.038)^2+(y-0.377)^2+(z-0.007)^2)/(4*0.00525625))+exp(-((x-0.215)^2+(y-0.305)^2+(z--0.085)^2)/(4*0.00525625))+exp(-((x--0.257)^2+(y--0.01)^2+(z--0.255)^2)/(4*0.00525625))+exp(-((x--0.245)^2+(y-0.217)^2+(z--0.085)^2)/(4*0.00525625))+exp(-((x--0.082)^2+(y--0.2183)^2+(z--0.225)^2)/(4*0.00525625))+exp(-((x-0.208)^2+(y--0.2143)^2+(z--0.249)^2)/(4*0.00525625))+exp(-((x--0.038)^2+(y--0.3753)^2+(z-0.007)^2)/(4*0.00525625))+exp(-((x--0.1056)^2+(y--0.2553)^2+(z-0.2453)^2)/(4*0.00525625))+exp(-((x-0.206)^2+(y--0.1593)^2+(z-0.1)^2)/(4*0.00525625))+exp(-((x--0.2426)^2+(y-0.156)^2+(z-0.2703)^2)/(4*0.00525625))+exp(-((x-0.04)^2+(y-0.15)^2+(z-0.236)^2)/(4*0.00525625))+exp(-((x-0.0434)^2+(y--0.077)^2+(z-0.4033)^2)/(4*0.00525625))+exp(-((x-0.3494)^2+(y-0.026)^2+(z-0.2543)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv12 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv12.value
an arbitrary functionrefcv2_env12: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv12,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env12 calculates the following quantities:
 Quantity   
 Description  
refcv2_env12.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env12..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv13: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x-0.057)^2+(y--0.127)^2+(z--0.239)^2)/(4*0.00525625))+exp(-((x--0.249)^2+(y--0.23)^2+(z--0.09)^2)/(4*0.00525625))+exp(-((x--0.254)^2+(y-0.071)^2+(z-0.094)^2)/(4*0.00525625))+exp(-((x-0.043)^2+(y-0.064)^2+(z-0.397)^2)/(4*0.00525625))+exp(-((x--0.105)^2+(y-0.248)^2+(z-0.252)^2)/(4*0.00525625))+exp(-((x--0.2524)^2+(y--0.003)^2+(z--0.2573)^2)/(4*0.00525625))+exp(-((x-0.2106)^2+(y-0.211)^2+(z--0.2533)^2)/(4*0.00525625))+exp(-((x--0.047)^2+(y--0.3873)^2+(z-0.008)^2)/(4*0.00525625))+exp(-((x-0.2)^2+(y--0.3083)^2+(z--0.089)^2)/(4*0.00525625))+exp(-((x-0.031)^2+(y--0.163)^2+(z-0.227)^2)/(4*0.00525625))+exp(-((x--0.252)^2+(y--0.157)^2+(z-0.261)^2)/(4*0.00525625))+exp(-((x--0.08)^2+(y-0.207)^2+(z--0.229)^2)/(4*0.00525625))+exp(-((x--0.047)^2+(y-0.365)^2+(z-0.008)^2)/(4*0.00525625))+exp(-((x-0.216)^2+(y-0.149)^2+(z-0.093)^2)/(4*0.00525625))+exp(-((x-0.359)^2+(y--0.032)^2+(z-0.243)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv13 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv13.value
an arbitrary functionrefcv2_env13: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv13,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env13 calculates the following quantities:
 Quantity   
 Description  
refcv2_env13.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env13..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv14: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.349)^2+(y--0.025)^2+(z--0.254)^2)/(4*0.00525625))+exp(-((x--0.205)^2+(y-0.159)^2+(z--0.1)^2)/(4*0.00525625))+exp(-((x--0.042)^2+(y-0.078)^2+(z--0.403)^2)/(4*0.00525625))+exp(-((x-0.255)^2+(y-0.071)^2+(z--0.1)^2)/(4*0.00525625))+exp(-((x-0.107)^2+(y-0.255)^2+(z--0.245)^2)/(4*0.00525625))+exp(-((x--0.214)^2+(y--0.3053)^2+(z-0.085)^2)/(4*0.00525625))+exp(-((x-0.038)^2+(y--0.3763)^2+(z--0.007)^2)/(4*0.00525625))+exp(-((x-0.243)^2+(y--0.156)^2+(z--0.27)^2)/(4*0.00525625))+exp(-((x--0.04)^2+(y--0.15)^2+(z--0.236)^2)/(4*0.00525625))+exp(-((x-0.083)^2+(y-0.218)^2+(z-0.225)^2)/(4*0.00525625))+exp(-((x--0.2076)^2+(y-0.214)^2+(z-0.2493)^2)/(4*0.00525625))+exp(-((x-0.2574)^2+(y-0.01)^2+(z-0.2553)^2)/(4*0.00525625))+exp(-((x-0.038)^2+(y-0.376)^2+(z--0.007)^2)/(4*0.00525625))+exp(-((x-0.246)^2+(y--0.217)^2+(z-0.085)^2)/(4*0.00525625))+exp(-((x--0.0706)^2+(y--0.12)^2+(z-0.2393)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv14 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv14.value
an arbitrary functionrefcv2_env14: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv14,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env14 calculates the following quantities:
 Quantity   
 Description  
refcv2_env14.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env14..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv15: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.034)^2+(y--0.075)^2+(z--0.396)^2)/(4*0.00525625))+exp(-((x-0.109)^2+(y--0.256)^2+(z--0.246)^2)/(4*0.00525625))+exp(-((x-0.253)^2+(y--0.072)^2+(z--0.092)^2)/(4*0.00525625))+exp(-((x--0.0676)^2+(y-0.12)^2+(z-0.2383)^2)/(4*0.00525625))+exp(-((x-0.244)^2+(y-0.216)^2+(z-0.093)^2)/(4*0.00525625))+exp(-((x--0.207)^2+(y--0.16)^2+(z--0.092)^2)/(4*0.00525625))+exp(-((x--0.355)^2+(y-0.024)^2+(z--0.237)^2)/(4*0.00525625))+exp(-((x--0.044)^2+(y-0.157)^2+(z--0.232)^2)/(4*0.00525625))+exp(-((x-0.246)^2+(y-0.161)^2+(z--0.256)^2)/(4*0.00525625))+exp(-((x-0.2504)^2+(y--0.017)^2+(z-0.2573)^2)/(4*0.00525625))+exp(-((x--0.2046)^2+(y--0.221)^2+(z-0.2633)^2)/(4*0.00525625))+exp(-((x-0.078)^2+(y--0.227)^2+(z-0.229)^2)/(4*0.00525625))+exp(-((x-0.038)^2+(y--0.377)^2+(z--0.007)^2)/(4*0.00525625))+exp(-((x-0.038)^2+(y-0.3753)^2+(z--0.007)^2)/(4*0.00525625))+exp(-((x--0.216)^2+(y-0.3043)^2+(z-0.093)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv15 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv15.value
an arbitrary functionrefcv2_env15: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv15,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env15 calculates the following quantities:
 Quantity   
 Description  
refcv2_env15.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env15..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv16: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.247)^2+(y--0.079)^2+(z-0.098)^2)/(4*0.00525625))+exp(-((x--0.104)^2+(y--0.26)^2+(z-0.248)^2)/(4*0.00525625))+exp(-((x-0.04)^2+(y--0.076)^2+(z-0.402)^2)/(4*0.00525625))+exp(-((x-0.203)^2+(y--0.157)^2+(z-0.099)^2)/(4*0.00525625))+exp(-((x-0.2046)^2+(y--0.231)^2+(z--0.2523)^2)/(4*0.00525625))+exp(-((x-0.059)^2+(y-0.116)^2+(z--0.243)^2)/(4*0.00525625))+exp(-((x--0.263)^2+(y-0.216)^2+(z--0.084)^2)/(4*0.00525625))+exp(-((x--0.2524)^2+(y--0.017)^2+(z--0.2483)^2)/(4*0.00525625))+exp(-((x--0.257)^2+(y-0.153)^2+(z-0.262)^2)/(4*0.00525625))+exp(-((x-0.033)^2+(y-0.157)^2+(z-0.238)^2)/(4*0.00525625))+exp(-((x--0.078)^2+(y--0.225)^2+(z--0.218)^2)/(4*0.00525625))+exp(-((x-0.41)^2+(y-0.137)^2+(z-0.013)^2)/(4*0.00525625))+exp(-((x--0.047)^2+(y--0.387)^2+(z-0.009)^2)/(4*0.00525625))+exp(-((x--0.047)^2+(y-0.3653)^2+(z-0.009)^2)/(4*0.00525625))+exp(-((x-0.208)^2+(y-0.2943)^2+(z--0.085)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv16 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv16.value
an arbitrary functionrefcv2_env16: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv16,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env16 calculates the following quantities:
 Quantity   
 Description  
refcv2_env16.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env16..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv17: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.297)^2+(y-0.007)^2+(z--0.303)^2)/(4*0.00525625))+exp(-((x--0.148)^2+(y-0.184)^2+(z--0.145)^2)/(4*0.00525625))+exp(-((x--0.012)^2+(y--0.227)^2+(z--0.17)^2)/(4*0.00525625))+exp(-((x--0.295)^2+(y--0.221)^2+(z--0.136)^2)/(4*0.00525625))+exp(-((x-0.163)^2+(y-0.317)^2+(z--0.14)^2)/(4*0.00525625))+exp(-((x--0.172)^2+(y-0.147)^2+(z-0.325)^2)/(4*0.00525625))+exp(-((x-0.0024)^2+(y--0.061)^2+(z-0.3553)^2)/(4*0.00525625))+exp(-((x-0.285)^2+(y--0.067)^2+(z-0.321)^2)/(4*0.00525625))+exp(-((x--0.217)^2+(y-0.305)^2+(z-0.093)^2)/(4*0.00525625))+exp(-((x-0.245)^2+(y--0.217)^2+(z-0.085)^2)/(4*0.00525625))+exp(-((x--0.043)^2+(y--0.064)^2+(z--0.397)^2)/(4*0.00525625))+exp(-((x--0.255)^2+(y--0.071)^2+(z-0.1)^2)/(4*0.00525625))+exp(-((x-0.207)^2+(y-0.16)^2+(z-0.092)^2)/(4*0.00525625))+exp(-((x-0.173)^2+(y-0.085)^2+(z--0.304)^2)/(4*0.00525625))+exp(-((x--0.009)^2+(y--0.288)^2+(z-0.185)^2)/(4*0.00525625))+exp(-((x-0.316)^2+(y--0.096)^2+(z--0.154)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv17 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv17.value
an arbitrary functionrefcv2_env17: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv17,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env17 calculates the following quantities:
 Quantity   
 Description  
refcv2_env17.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env17..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv18: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.307)^2+(y--0.103)^2+(z-0.149)^2)/(4*0.00525625))+exp(-((x--0.163)^2+(y-0.081)^2+(z-0.303)^2)/(4*0.00525625))+exp(-((x-0.005)^2+(y--0.301)^2+(z--0.184)^2)/(4*0.00525625))+exp(-((x-0.149)^2+(y-0.177)^2+(z-0.158)^2)/(4*0.00525625))+exp(-((x-0.0016)^2+(y--0.074)^2+(z--0.3513)^2)/(4*0.00525625))+exp(-((x-0.285)^2+(y--0.234)^2+(z-0.133)^2)/(4*0.00525625))+exp(-((x-0.002)^2+(y--0.228)^2+(z-0.167)^2)/(4*0.00525625))+exp(-((x--0.17)^2+(y-0.314)^2+(z-0.139)^2)/(4*0.00525625))+exp(-((x-0.174)^2+(y-0.136)^2+(z--0.323)^2)/(4*0.00525625))+exp(-((x--0.281)^2+(y--0.068)^2+(z--0.317)^2)/(4*0.00525625))+exp(-((x-0.207)^2+(y-0.294)^2+(z--0.086)^2)/(4*0.00525625))+exp(-((x--0.25)^2+(y--0.23)^2+(z--0.09)^2)/(4*0.00525625))+exp(-((x-0.254)^2+(y--0.071)^2+(z--0.094)^2)/(4*0.00525625))+exp(-((x-0.042)^2+(y--0.078)^2+(z-0.403)^2)/(4*0.00525625))+exp(-((x--0.203)^2+(y-0.157)^2+(z--0.099)^2)/(4*0.00525625))+exp(-((x-0.297)^2+(y--0.007)^2+(z-0.303)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv18 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv18.value
an arbitrary functionrefcv2_env18: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv18,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env18 calculates the following quantities:
 Quantity   
 Description  
refcv2_env18.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env18..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv19: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x-0.143)^2+(y--0.181)^2+(z-0.15)^2)/(4*0.00525625))+exp(-((x-0.287)^2+(y-0.003)^2+(z-0.304)^2)/(4*0.00525625))+exp(-((x--0.216)^2+(y--0.149)^2+(z--0.093)^2)/(4*0.00525625))+exp(-((x--0.263)^2+(y-0.216)^2+(z--0.085)^2)/(4*0.00525625))+exp(-((x--0.016)^2+(y-0.295)^2+(z--0.182)^2)/(4*0.00525625))+exp(-((x--0.185)^2+(y--0.312)^2+(z-0.134)^2)/(4*0.00525625))+exp(-((x--0.173)^2+(y--0.085)^2+(z-0.304)^2)/(4*0.00525625))+exp(-((x--0.321)^2+(y-0.099)^2+(z-0.159)^2)/(4*0.00525625))+exp(-((x--0.0054)^2+(y-0.062)^2+(z--0.3463)^2)/(4*0.00525625))+exp(-((x--0.01)^2+(y-0.232)^2+(z-0.164)^2)/(4*0.00525625))+exp(-((x-0.28)^2+(y-0.236)^2+(z-0.14)^2)/(4*0.00525625))+exp(-((x-0.169)^2+(y--0.146)^2+(z--0.316)^2)/(4*0.00525625))+exp(-((x-0.2)^2+(y--0.308)^2+(z--0.089)^2)/(4*0.00525625))+exp(-((x-0.034)^2+(y-0.075)^2+(z-0.396)^2)/(4*0.00525625))+exp(-((x-0.247)^2+(y-0.079)^2+(z--0.098)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv19 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv19.value
an arbitrary functionrefcv2_env19: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv19,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env19 calculates the following quantities:
 Quantity   
 Description  
refcv2_env19.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env19..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv20: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.144)^2+(y--0.184)^2+(z--0.154)^2)/(4*0.00525625))+exp(-((x--0.009)^2+(y-0.288)^2+(z-0.185)^2)/(4*0.00525625))+exp(-((x-0.312)^2+(y-0.096)^2+(z--0.145)^2)/(4*0.00525625))+exp(-((x-0.165)^2+(y--0.309)^2+(z--0.136)^2)/(4*0.00525625))+exp(-((x--0.297)^2+(y-0.229)^2+(z--0.14)^2)/(4*0.00525625))+exp(-((x--0.007)^2+(y-0.233)^2+(z--0.164)^2)/(4*0.00525625))+exp(-((x--0.0026)^2+(y-0.055)^2+(z-0.3493)^2)/(4*0.00525625))+exp(-((x--0.175)^2+(y--0.155)^2+(z-0.321)^2)/(4*0.00525625))+exp(-((x-0.243)^2+(y-0.217)^2+(z-0.093)^2)/(4*0.00525625))+exp(-((x--0.215)^2+(y--0.305)^2+(z-0.085)^2)/(4*0.00525625))+exp(-((x-0.205)^2+(y--0.159)^2+(z-0.1)^2)/(4*0.00525625))+exp(-((x--0.253)^2+(y-0.072)^2+(z-0.092)^2)/(4*0.00525625))+exp(-((x--0.04)^2+(y-0.076)^2+(z--0.402)^2)/(4*0.00525625))+exp(-((x-0.163)^2+(y--0.081)^2+(z--0.303)^2)/(4*0.00525625))+exp(-((x--0.287)^2+(y--0.003)^2+(z--0.304)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv20 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv20.value
an arbitrary functionrefcv2_env20: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv20,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env20 calculates the following quantities:
 Quantity   
 Description  
refcv2_env20.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env20..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv21: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.2864)^2+(y--0.004)^2+(z--0.3043)^2)/(4*0.00525625))+exp(-((x-0.0106)^2+(y--0.233)^2+(z--0.1643)^2)/(4*0.00525625))+exp(-((x--0.0344)^2+(y--0.075)^2+(z--0.3963)^2)/(4*0.00525625))+exp(-((x--0.169)^2+(y-0.1453)^2+(z-0.316)^2)/(4*0.00525625))+exp(-((x-0.006)^2+(y--0.063)^2+(z-0.346)^2)/(4*0.00525625))+exp(-((x--0.28)^2+(y--0.237)^2+(z--0.14)^2)/(4*0.00525625))+exp(-((x-0.185)^2+(y-0.3113)^2+(z--0.134)^2)/(4*0.00525625))+exp(-((x--0.247)^2+(y--0.079)^2+(z-0.097)^2)/(4*0.00525625))+exp(-((x-0.216)^2+(y-0.1493)^2+(z-0.093)^2)/(4*0.00525625))+exp(-((x--0.2)^2+(y-0.3083)^2+(z-0.089)^2)/(4*0.00525625))+exp(-((x-0.263)^2+(y--0.216)^2+(z-0.084)^2)/(4*0.00525625))+exp(-((x-0.016)^2+(y--0.295)^2+(z-0.182)^2)/(4*0.00525625))+exp(-((x-0.1736)^2+(y-0.0843)^2+(z--0.3043)^2)/(4*0.00525625))+exp(-((x--0.143)^2+(y-0.1813)^2+(z--0.15)^2)/(4*0.00525625))+exp(-((x-0.322)^2+(y--0.1)^2+(z--0.159)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv21 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv21.value
an arbitrary functionrefcv2_env21: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv21,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env21 calculates the following quantities:
 Quantity   
 Description  
refcv2_env21.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env21..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv22: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.3116)^2+(y--0.096)^2+(z-0.1453)^2)/(4*0.00525625))+exp(-((x-0.174)^2+(y-0.1553)^2+(z--0.321)^2)/(4*0.00525625))+exp(-((x-0.002)^2+(y--0.055)^2+(z--0.349)^2)/(4*0.00525625))+exp(-((x-0.297)^2+(y--0.229)^2+(z-0.14)^2)/(4*0.00525625))+exp(-((x-0.0064)^2+(y--0.233)^2+(z-0.1643)^2)/(4*0.00525625))+exp(-((x--0.166)^2+(y-0.3093)^2+(z-0.136)^2)/(4*0.00525625))+exp(-((x-0.252)^2+(y--0.071)^2+(z--0.092)^2)/(4*0.00525625))+exp(-((x-0.0394)^2+(y--0.075)^2+(z-0.4013)^2)/(4*0.00525625))+exp(-((x--0.206)^2+(y-0.1593)^2+(z--0.1)^2)/(4*0.00525625))+exp(-((x-0.214)^2+(y-0.3053)^2+(z--0.085)^2)/(4*0.00525625))+exp(-((x--0.244)^2+(y--0.216)^2+(z--0.093)^2)/(4*0.00525625))+exp(-((x-0.009)^2+(y--0.288)^2+(z--0.185)^2)/(4*0.00525625))+exp(-((x-0.2864)^2+(y-0.004)^2+(z-0.3043)^2)/(4*0.00525625))+exp(-((x--0.1626)^2+(y-0.0823)^2+(z-0.3033)^2)/(4*0.00525625))+exp(-((x-0.1434)^2+(y-0.1853)^2+(z-0.1543)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv22 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv22.value
an arbitrary functionrefcv2_env22: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv22,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env22 calculates the following quantities:
 Quantity   
 Description  
refcv2_env22.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env22..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv23: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.3166)^2+(y-0.097)^2+(z-0.1543)^2)/(4*0.00525625))+exp(-((x--0.003)^2+(y-0.061)^2+(z--0.355)^2)/(4*0.00525625))+exp(-((x--0.246)^2+(y-0.217)^2+(z--0.085)^2)/(4*0.00525625))+exp(-((x-0.009)^2+(y-0.288)^2+(z--0.185)^2)/(4*0.00525625))+exp(-((x-0.172)^2+(y--0.1473)^2+(z--0.325)^2)/(4*0.00525625))+exp(-((x-0.216)^2+(y--0.3043)^2+(z--0.093)^2)/(4*0.00525625))+exp(-((x-0.1484)^2+(y--0.1843)^2+(z-0.1453)^2)/(4*0.00525625))+exp(-((x--0.1736)^2+(y--0.0843)^2+(z-0.3043)^2)/(4*0.00525625))+exp(-((x--0.163)^2+(y--0.3173)^2+(z-0.14)^2)/(4*0.00525625))+exp(-((x--0.208)^2+(y--0.1593)^2+(z--0.092)^2)/(4*0.00525625))+exp(-((x-0.0114)^2+(y-0.227)^2+(z-0.1703)^2)/(4*0.00525625))+exp(-((x-0.294)^2+(y-0.221)^2+(z-0.136)^2)/(4*0.00525625))+exp(-((x-0.0424)^2+(y-0.065)^2+(z-0.3973)^2)/(4*0.00525625))+exp(-((x-0.254)^2+(y-0.071)^2+(z--0.1)^2)/(4*0.00525625))+exp(-((x-0.2974)^2+(y--0.006)^2+(z-0.3033)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv23 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv23.value
an arbitrary functionrefcv2_env23: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv23,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env23 calculates the following quantities:
 Quantity   
 Description  
refcv2_env23.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env23..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv24: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x-0.306)^2+(y-0.103)^2+(z--0.149)^2)/(4*0.00525625))+exp(-((x--0.0034)^2+(y-0.227)^2+(z--0.1673)^2)/(4*0.00525625))+exp(-((x--0.2974)^2+(y-0.006)^2+(z--0.3033)^2)/(4*0.00525625))+exp(-((x--0.0434)^2+(y-0.077)^2+(z--0.4033)^2)/(4*0.00525625))+exp(-((x--0.208)^2+(y--0.2943)^2+(z-0.085)^2)/(4*0.00525625))+exp(-((x--0.175)^2+(y--0.1373)^2+(z-0.323)^2)/(4*0.00525625))+exp(-((x-0.202)^2+(y--0.1573)^2+(z-0.098)^2)/(4*0.00525625))+exp(-((x-0.169)^2+(y--0.3153)^2+(z--0.139)^2)/(4*0.00525625))+exp(-((x--0.149)^2+(y--0.1783)^2+(z--0.158)^2)/(4*0.00525625))+exp(-((x-0.1626)^2+(y--0.0823)^2+(z--0.3033)^2)/(4*0.00525625))+exp(-((x-0.28)^2+(y-0.067)^2+(z-0.317)^2)/(4*0.00525625))+exp(-((x--0.003)^2+(y-0.073)^2+(z-0.351)^2)/(4*0.00525625))+exp(-((x--0.286)^2+(y-0.233)^2+(z--0.133)^2)/(4*0.00525625))+exp(-((x--0.255)^2+(y-0.071)^2+(z-0.094)^2)/(4*0.00525625))+exp(-((x-0.249)^2+(y-0.23)^2+(z-0.09)^2)/(4*0.00525625))+exp(-((x--0.005)^2+(y-0.301)^2+(z-0.184)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv24 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv24.value
an arbitrary functionrefcv2_env24: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv24,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env24 calculates the following quantities:
 Quantity   
 Description  
refcv2_env24.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env24..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv25: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x-0.136)^2+(y--0.411)^2+(z--0.025)^2)/(4*0.00525625))+exp(-((x-0.136)^2+(y-0.3413)^2+(z--0.025)^2)/(4*0.00525625))+exp(-((x--0.147)^2+(y--0.405)^2+(z-0.009)^2)/(4*0.00525625))+exp(-((x--0.147)^2+(y-0.3473)^2+(z-0.009)^2)/(4*0.00525625))+exp(-((x-0.311)^2+(y-0.133)^2+(z-0.005)^2)/(4*0.00525625))+exp(-((x--0.319)^2+(y-0.137)^2+(z--0.019)^2)/(4*0.00525625))+exp(-((x--0.069)^2+(y-0.121)^2+(z-0.238)^2)/(4*0.00525625))+exp(-((x-0.058)^2+(y-0.117)^2+(z--0.244)^2)/(4*0.00525625))+exp(-((x-0.105)^2+(y--0.248)^2+(z--0.252)^2)/(4*0.00525625))+exp(-((x--0.107)^2+(y--0.255)^2+(z-0.245)^2)/(4*0.00525625))+exp(-((x-0.355)^2+(y--0.024)^2+(z-0.237)^2)/(4*0.00525625))+exp(-((x-0.148)^2+(y--0.184)^2+(z-0.145)^2)/(4*0.00525625))+exp(-((x--0.149)^2+(y--0.177)^2+(z--0.158)^2)/(4*0.00525625))+exp(-((x-0.321)^2+(y--0.099)^2+(z--0.159)^2)/(4*0.00525625))+exp(-((x--0.312)^2+(y--0.096)^2+(z-0.145)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv25 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv25.value
an arbitrary functionrefcv2_env25: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv25,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env25 calculates the following quantities:
 Quantity   
 Description  
refcv2_env25.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env25..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv26: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.359)^2+(y-0.032)^2+(z--0.243)^2)/(4*0.00525625))+exp(-((x--0.328)^2+(y--0.131)^2+(z--0.016)^2)/(4*0.00525625))+exp(-((x--0.316)^2+(y-0.096)^2+(z-0.154)^2)/(4*0.00525625))+exp(-((x--0.153)^2+(y--0.3393)^2+(z-0.014)^2)/(4*0.00525625))+exp(-((x-0.137)^2+(y--0.3353)^2+(z--0.01)^2)/(4*0.00525625))+exp(-((x-0.309)^2+(y--0.125)^2+(z-0.018)^2)/(4*0.00525625))+exp(-((x-0.057)^2+(y--0.127)^2+(z--0.239)^2)/(4*0.00525625))+exp(-((x--0.071)^2+(y--0.121)^2+(z-0.239)^2)/(4*0.00525625))+exp(-((x-0.349)^2+(y-0.025)^2+(z-0.254)^2)/(4*0.00525625))+exp(-((x--0.109)^2+(y-0.256)^2+(z-0.246)^2)/(4*0.00525625))+exp(-((x-0.104)^2+(y-0.26)^2+(z--0.248)^2)/(4*0.00525625))+exp(-((x-0.307)^2+(y-0.103)^2+(z--0.149)^2)/(4*0.00525625))+exp(-((x--0.143)^2+(y-0.181)^2+(z--0.15)^2)/(4*0.00525625))+exp(-((x-0.144)^2+(y-0.184)^2+(z-0.154)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv26 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv26.value
an arbitrary functionrefcv2_env26: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv26,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env26 calculates the following quantities:
 Quantity   
 Description  
refcv2_env26.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env26..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv27: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.3094)^2+(y-0.124)^2+(z--0.0183)^2)/(4*0.00525625))+exp(-((x--0.3494)^2+(y--0.026)^2+(z--0.2543)^2)/(4*0.00525625))+exp(-((x-0.0706)^2+(y-0.12)^2+(z--0.2393)^2)/(4*0.00525625))+exp(-((x-0.1536)^2+(y-0.338)^2+(z--0.0143)^2)/(4*0.00525625))+exp(-((x--0.104)^2+(y--0.2603)^2+(z-0.247)^2)/(4*0.00525625))+exp(-((x-0.143)^2+(y--0.1813)^2+(z-0.15)^2)/(4*0.00525625))+exp(-((x--0.1434)^2+(y--0.1853)^2+(z--0.1543)^2)/(4*0.00525625))+exp(-((x-0.1086)^2+(y--0.2563)^2+(z--0.2463)^2)/(4*0.00525625))+exp(-((x--0.137)^2+(y-0.334)^2+(z-0.01)^2)/(4*0.00525625))+exp(-((x-0.328)^2+(y-0.13)^2+(z-0.016)^2)/(4*0.00525625))+exp(-((x-0.359)^2+(y--0.032)^2+(z-0.243)^2)/(4*0.00525625))+exp(-((x--0.057)^2+(y-0.127)^2+(z-0.239)^2)/(4*0.00525625))+exp(-((x-0.3166)^2+(y--0.097)^2+(z--0.1543)^2)/(4*0.00525625))+exp(-((x--0.306)^2+(y--0.103)^2+(z-0.149)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv27 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv27.value
an arbitrary functionrefcv2_env27: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv27,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env27 calculates the following quantities:
 Quantity   
 Description  
refcv2_env27.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env27..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2_matenv28: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_cmat.x,refcv2_cmat.y,refcv2_cmat.z,refcv2_cmat.w 
VAR
the names to give each of the arguments in the function
=x,y,z,w 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
FUNC
the function you wish to evaluate
=(step(w-0.0001)*step(0.652446-w)/16)*(exp(-((x--0.322)^2+(y-0.1)^2+(z-0.159)^2)/(4*0.00525625))+exp(-((x--0.3114)^2+(y--0.133)^2+(z--0.0053)^2)/(4*0.00525625))+exp(-((x--0.3564)^2+(y-0.025)^2+(z--0.2373)^2)/(4*0.00525625))+exp(-((x-0.318)^2+(y--0.137)^2+(z-0.019)^2)/(4*0.00525625))+exp(-((x--0.137)^2+(y--0.341)^2+(z-0.025)^2)/(4*0.00525625))+exp(-((x--0.137)^2+(y-0.4113)^2+(z-0.025)^2)/(4*0.00525625))+exp(-((x-0.1456)^2+(y--0.347)^2+(z--0.0093)^2)/(4*0.00525625))+exp(-((x-0.1456)^2+(y-0.4053)^2+(z--0.0093)^2)/(4*0.00525625))+exp(-((x-0.351)^2+(y-0.021)^2+(z-0.256)^2)/(4*0.00525625))+exp(-((x--0.106)^2+(y-0.2493)^2+(z-0.252)^2)/(4*0.00525625))+exp(-((x-0.1056)^2+(y-0.2553)^2+(z--0.2453)^2)/(4*0.00525625))+exp(-((x-0.0676)^2+(y--0.12)^2+(z--0.2383)^2)/(4*0.00525625))+exp(-((x--0.059)^2+(y--0.116)^2+(z-0.243)^2)/(4*0.00525625))+exp(-((x-0.3116)^2+(y-0.096)^2+(z--0.1453)^2)/(4*0.00525625))+exp(-((x--0.1484)^2+(y-0.1843)^2+(z--0.1453)^2)/(4*0.00525625))+exp(-((x-0.149)^2+(y-0.1783)^2+(z-0.158)^2)/(4*0.00525625 
The CUSTOM action with label refcv2_matenv28 calculates the following quantities:
 Quantity   
 Description  
refcv2_matenv28.value
an arbitrary functionrefcv2_env28: 
MATRIX_VECTOR_PRODUCT
Calculate the product of the matrix and the vector More details
 
ARG
the input for this action is the scalar output from one or more other actions
=refcv2_matenv28,refcv2_ones 
The MATRIX_VECTOR_PRODUCT action with label refcv2_env28 calculates the following quantities:
 Quantity   
 Description  
refcv2_env28.value
the vector that is obtained by taking the product between the matrix and the vector that were input
refcv2_env28..#!custom
the names of the output components for this action depend on the actions input file see the example inputs below for detailsrefcv2: 
CUSTOM
Calculate a combination of variables using a custom expression. More details
 
ARG
the input to this function
=refcv2_env1,refcv2_env2,refcv2_env3,refcv2_env4,refcv2_env5,refcv2_env6,refcv2_env7,refcv2_env8,refcv2_env9,refcv2_env10,refcv2_env11,refcv2_env12,refcv2_env13,refcv2_env14,refcv2_env15,refcv2_env16,refcv2_env17,refcv2_env18,refcv2_env19,refcv2_env20,refcv2_env21,refcv2_env22,refcv2_env23,refcv2_env24,refcv2_env25,refcv2_env26,refcv2_env27,refcv2_env28 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
VAR
the names to give each of the arguments in the function
=v1,v2,v3,v4,v5,v6,v7,v8,v9,v10,v11,v12,v13,v14,v15,v16,v17,v18,v19,v20,v21,v22,v23,v24,v25,v26,v27,v28 
FUNC
the function you wish to evaluate
=(1/100)*log(exp(100*v1)+exp(100*v2)+exp(100*v3)+exp(100*v4)+exp(100*v5)+exp(100*v6)+exp(100*v7)+exp(100*v8)+exp(100*v9)+exp(100*v10)+exp(100*v11)+exp(100*v12)+exp(100*v13)+exp(100*v14)+exp(100*v15)+exp(100*v16)+exp(100*v17)+exp(100*v18)+exp(100*v19)+exp(100*v20)+exp(100*v21)+exp(100*v22)+exp(100*v23)+exp(100*v24)+exp(100*v25)+exp(100*v26)+exp(100*v27)+exp(100*v28 
refcv2_mt: 
MORE_THAN
Use a switching function to determine how many of the input variables are more than a certain cutoff. More details
 
ARG
the input to this function
=refcv2 
SWITCH
This keyword is used if you want to employ an alternative to the continuous swiching function defined above
={CUBIC D_0=0.83000 D_MAX=0.83001} 
The MORE_THAN action with label refcv2_mt calculates the following quantities:
 Quantity   
 Description  
refcv2_mt.value
a function that is one if the if the input is more than a thresholdrefcv2_morethan: 
SUM
Calculate the sum of the arguments More details
 
ARG
the input to this function
=refcv2_mt 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
The SUM action with label refcv2_morethan calculates the following quantities:
 Quantity   
 Description  
refcv2_morethan.value
the sumrefcv2_mean: 
MEAN
Calculate the arithmetic mean of the elements in a vector More details
 
ARG
the input to this function
=refcv2 
PERIODIC
if the output of your function is periodic then you should specify the periodicity of the function
=NO 
# --- End of included input --- The MEAN action with label refcv2_mean calculates the following quantities:
 Quantity   
 Description  
refcv2_mean.value
the sum