Project ID: plumID:22.004
Stderr for source: input_files/Aldol_reaction/2_Sampling/plumed.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above Contacts.JIKzNE.cpp: In constructor ‘PLMD::colvar::Contacts::Contacts(const PLMD::ActionOptions&)’: Contacts.JIKzNE.cpp:93:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 93 | for(unsigned int i=0; i<num_atomsa; i++) | ~^~~~~~~~~~~ Contacts.JIKzNE.cpp:99:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 99 | for(unsigned int i=0; i<num_atomsb; i++) | ~^~~~~~~~~~~ Contacts.JIKzNE.cpp:124:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 124 | for(unsigned int i=0;i<num_atomsa;++i){ | ~^~~~~~~~~~~ Contacts.JIKzNE.cpp:129:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 129 | for(unsigned int i=0;i<num_atomsb;++i){ | ~^~~~~~~~~~~ terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (tools/Keywords.cpp:211) void PLMD::Keywords::addFlag(const string&, bool, const string&) +++ assertion failed: !def the second argument to addFlag must be false COMPONENTS [fv-az1055-513:06630] *** Process received signal *** [fv-az1055-513:06630] Signal: Aborted (6) [fv-az1055-513:06630] Signal code: (-6) [fv-az1055-513:06630] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f4e61042520] [fv-az1055-513:06630] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f4e610969fc] [fv-az1055-513:06630] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f4e61042476] [fv-az1055-513:06630] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f4e610287f3] [fv-az1055-513:06630] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa2b9e)[0x7f4e614a2b9e] [fv-az1055-513:06630] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae20c)[0x7f4e614ae20c] [fv-az1055-513:06630] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae277)[0x7f4e614ae277] [fv-az1055-513:06630] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f4e614ae52b] [fv-az1055-513:06630] [ 8] plumed_master(+0x14274)[0x5593a07a8274] [fv-az1055-513:06630] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f4e61029d90] [fv-az1055-513:06630] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f4e61029e40] [fv-az1055-513:06630] [11] plumed_master(+0x14ed5)[0x5593a07a8ed5] [fv-az1055-513:06630] *** End of error message ***