Project ID: plumID:20.004
Stderr for source: aldol/3_enhanced_sampling/plumed.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above Contacts.ip3Env.cpp: In constructor ‘PLMD::colvar::Contacts::Contacts(const PLMD::ActionOptions&)’: Contacts.ip3Env.cpp:93:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 93 | for(unsigned int i=0; i<num_atomsa; i++) | ~^~~~~~~~~~~ Contacts.ip3Env.cpp:99:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 99 | for(unsigned int i=0; i<num_atomsb; i++) | ~^~~~~~~~~~~ Contacts.ip3Env.cpp:124:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 124 | for(unsigned int i=0;i<num_atomsa;++i){ | ~^~~~~~~~~~~ Contacts.ip3Env.cpp:129:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 129 | for(unsigned int i=0;i<num_atomsb;++i){ | ~^~~~~~~~~~~ terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): (tools/Keywords.cpp:211) void PLMD::Keywords::addFlag(const string&, bool, const string&) +++ assertion failed: !def the second argument to addFlag must be false COMPONENTS [fv-az566-100:09983] *** Process received signal *** [fv-az566-100:09983] Signal: Aborted (6) [fv-az566-100:09983] Signal code: (-6) [fv-az566-100:09983] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f6180842520] [fv-az566-100:09983] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f61808969fc] [fv-az566-100:09983] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f6180842476] [fv-az566-100:09983] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f61808287f3] [fv-az566-100:09983] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa2b9e)[0x7f6180ca2b9e] [fv-az566-100:09983] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae20c)[0x7f6180cae20c] [fv-az566-100:09983] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae277)[0x7f6180cae277] [fv-az566-100:09983] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f6180cae52b] [fv-az566-100:09983] [ 8] plumed_master(+0x14274)[0x556632ae1274] [fv-az566-100:09983] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f6180829d90] [fv-az566-100:09983] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f6180829e40] [fv-az566-100:09983] [11] plumed_master(+0x14ed5)[0x556632ae1ed5] [fv-az566-100:09983] *** End of error message ***